Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq12047 214 7e-51 seq13221 152 2e-32 seq6167 96.9 1e-15 >seq12047 Length=362 Score = 214 bits (236), Expect = 7e-51 Identities = 240/321 (75%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 9094 GTCGAACTCCACCTTGGTGCCGAGGAGGTGTGCCTCGAAGCTGATCGACAGGCCTTCGGC 9153 |||| |||| | |||| || || || || || || || ||||| |||| ||||||||| Sbjct 322 GTCGTACTCGATCTTGTCCCCTAGCAGATGCGCTTCAAAACTGATGGACAAGCCTTCGGC 263 Query 9154 GCGGCCGGTGAAGCGGCGGAACTGGTTGAAGGTGCGCTTGTCCGCCGGGATCTCCGGCGA 9213 ||||||||||| || ||||| ||||||| ||||| || ||| ||||| |||||||| Sbjct 262 ACGGCCGGTGAACCGACGGAATTGGTTGAGAGTGCGTTTATCCAGGGGGATTTCCGGCGA 203 Query 9214 CAGGCCGTAGTCCTTGTGCTGGATGAAGTCGTAGAACGCCCGTGGCTGCTGTTCGTCGAT 9273 ||||||||||||||| | |||| ||||||||||||| || | | ||| ||||| Sbjct 202 CAGGCCGTAGTCCTTATTGCGGATATGGTCGTAGAACGCCTTGGGGCGATCTTCATCGAT 143 Query 9274 CAGTTCGGAAAGGGCGTCGAGGGTCATCGGCTCACCGAGGCGTGCCTGCGCGGTGGCGTA 9333 || | || || | || ||| ||| || |||||||| ||||| ||||||||| Sbjct 142 CAAGCCTGACAGTTCCTCCAGGCCCATGGGTTCACCGAGCTTGGCCTGGCTGGTGGCGTA 83 Query 9334 GTCGACCAGCGACACGGTTTTTTCGCGGGCCTGTTCCTCGGCCATGCCCTCGCTTTCCAC 9393 ||| ||||| | | |||||| ||||||||| ||| || | || | | ||| |||| || Sbjct 82 GTCCACCAGGGCCTTGGTTTTCTCGCGGGCCGATTCGTCTGGCAGGTCTTCGTTTTCAAC 23 Query 9394 GAAGTCGCTGAAGGCTTTCAG 9414 |||||||||||| || || || Sbjct 22 GAAGTCGCTGAACGCCTTGAG 2 >seq13221 Length=271 Score = 152 bits (168), Expect = 2e-32 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 62072 ATCAACTGTGGTCCCTGGTTTCGGACATTCCCAACTGCTGGATCGACCGCGTACCAG--G 62129 |||||| || || | |||||| ||||| || || || | ||||||| | |||| | Sbjct 221 ATCAACGCCGGCCCTTTGTTTCGCACATTGCCCACGGCAGTATCGACCTTGAACCACTCG 162 Query 62130 TAAACGACTCGCTCGGCTCGCCCTGGTGGAGCACGATCTGCTCCGCGCGCTCCGGTGTTG 62189 |||| |||| ||| ||||||||||| ||||| ||||| || || |||||| | | Sbjct 161 AAAAC--CTCGGCCGGTTCGCCCTGGTGTAGCACCATCTGTTCTGCTCGCTCCTTGGGCG 104 Query 62190 TCGCCGGGTCAATCCACTCCCGGGCCAACTCGGGCGGCAGCACAACCGGTCTCCGGTCGT 62249 | |||||||| | ||| |||| |||| || |||| |||||| || || | |||||||| Sbjct 103 TGGCCGGGTCCAGCCATTCCCTAGCCAGGTCCGGCGTCAGCACCACGGGCCGCCGGTCGT 44 Query 62250 GAATATCGACCATGCCGCCGGCGCTATCGGCGGTGATGAT 62289 | || || ||||| ||||||||||| |||||||||||||| Sbjct 43 GGATGTCCACCATTCCGCCGGCGCTGTCGGCGGTGATGAT 4 >seq6167 Length=616 Score = 96.9 bits (106), Expect = 1e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 11264 CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGG 11323 || |||||||||||||| | |||||| ||||| |||| | || | ||| || ||| | Sbjct 436 CCCTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTG 377 Query 11324 CCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCT 11383 || || ||||| || |||||||| || || ||||| || || || ||||| ||||| Sbjct 376 CCGAACAGCACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCA 317 Query 11384 TTCCAGCTTTCGCTAGTGGCCAGACTG-AGGGAGGTGACCGCCTTTCCGCCCGGGGTAGA 11442 ||||||||| ||||| | ||| ||| | || || ||| ||| | | Sbjct 316 CGCCAGCTTTCTGACGTGGCGA-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTA 258 Query 11443 TCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGC 11502 | | || ||||| | ||||||| | ||||| ||||| |||||||| | || ||||| Sbjct 257 ACGGACTTCCGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTTGATACCACGTGC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208465195213912