Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1176 114 2e-21 >seq1176 Length=29467 Score = 114 bits (126), Expect = 2e-21 Identities = 141/189 (75%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || |||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||| Sbjct 26504 GGTATCACCAAGCCAGCCATCCGTCGTCTAGCTCGTCGTGGTGGTGTCAAGCGTATCTC- 26446 Query 16532 GGATT---GGTCTATGAAGAGATTCGTGATGTTTTGA-AGATCTTCCTCAAGACCGTTAT 16587 ||| ||||||| ||||| ||| | || | | | || ||| | ||| || || Sbjct 26445 --ATTCCCCATCTATGAGGAGATCCGTAACGTACTCAGACAT-TTCTTGGAGAATGTCAT 26389 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || ||| || | ||| || ||||| || || ||| || ||||| |||||||| | Sbjct 26388 CCGTGACTCTGTTGCCTACACTGAGCATGCCAACCGTCGTACCGTCACAGCCATGGATGT 26329 Query 16648 CGTCTATGC 16656 ||||||||| Sbjct 26328 CGTCTATGC 26320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062964743726