Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq126 264 2e-65 seq76 149 1e-30 >seq126 Length=461790 Score = 264 bits (292), Expect = 2e-65 Identities = 525/769 (68%), Gaps = 29/769 (4%) Strand=Plus/Minus Query 193423 AAATAATGAAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCG 193482 ||| |||||||| |||| | |||||||| || || || || ||||| | ||| | || | Sbjct 314199 AAAAAATGAAAATAGCACTTATAACAGGAATTACAGGTCAAGATGGGGCATATTTAGCTG 314140 Query 193483 AGTTTCTTTTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCA 193542 | || | || || ||||| |||||||| |||||| | | | ||||| ||| | | Sbjct 314139 ATTTATTATTAAAAAAAGGATACGAAGTTCACGGTATTAAACGTCGTAGTTCTCTATTTA 314080 Query 193543 ATACTCATAGAATTGATCATATCTA------------TGA-GAAGATC-ACTCTT----- 193583 |||| || | ||||||||| | || ||| ||| || || || Sbjct 314079 ATACAGATCGTATTGATCATTTATACCAAGATCCTCATGAAGAAAATGTACGTTTTAAAT 314020 Query 193584 --CATTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAGTTGAAC 193641 |||||||||||| ||| ||| | ||| | || | | || | ||| ||| Sbjct 314019 TGCATTATGGAGATTTAAGTGACTCAACTAATTTAATAAGAATTATACAAGAAGTACAAC 313960 Query 193642 CTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAG 193701 | | ||| || |||||||||||||| ||||| || ||||| ||||| | |||| Sbjct 313959 CAGATGAAATTTATAATCTTGGTGCGATGAGTCACGTAAAAGTAAGTTTTGATACTCCAG 313900 Query 193702 AGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGT 193761 | |||||| |||||| ||||| | |||||||| | | || | |||||| | ||||| Sbjct 313899 AATATACTGCTAATGCTGATGGTATAGGAACTTTACGCTTATTAGAAGCAATGCGTATCC 313840 Query 193762 TGGGAATGGAGAAAGATGTTC-GCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGT 193820 | | | | | ||||| | || ||||| || ||||| || ||||||| Sbjct 313839 T-GAATTTAACAAAGAAAACCAAAATATATCAAGCTTCTACATCTGAGTTGTATGGCTTA 313781 Query 193821 GTTCTAGGCA-CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGT 193879 |||| ||||| ||| | |||||||| ||| || ||| |||| || |||||||||| || Sbjct 313780 GTTC-AGGCAGTTCCTCAATCAGAAAGCACTCCTTTTTATCCTCGTTCTCCTTATGCAGT 313722 Query 193880 AGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGC 193939 ||||| |||||| ||||||||| | | |||||| | || ||||||| | || Sbjct 313721 TGCAAAAATGTATGCTTATTGGATTACCGTAAATTATAGAGAAGCATATGGTATGTTTGC 313662 Query 193940 TAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCG 193999 | ||||||| | || ||||| ||| ||| |||||| || || ||||| ||||| Sbjct 313661 GTGCAATGGTATTTTATTTAATCATGAAAGTCCTTTAAGAGGAGAAACTTTTGTCACTCG 313602 Query 194000 TAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTA-TCTTG 194058 ||| ||||| || | ||||| || | | || | ||| ||| |||| | || Sbjct 313601 TAAAATTACTAGAGCGGTTTCTAAAATGGCATTAGGTATGCAG--GATAATTTATTTTTA 313544 Query 194059 GTAATCTTA-ATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGG 194117 | || |||| |||| | || |||||||| || ||||| ||||||||||| || |||||| Sbjct 313543 GGAAACTTAGATGCGAGAAGAGATTGGGGGCATGCAAAAGATTATGTTGAGGCTATGTGG 313484 Query 194118 TTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTG 194166 | || ||||| || ||| |||| || |||||||| ||||| || |||| Sbjct 313483 CTGATTTTGCAGCAAGATCAACCTGAAGATTATGTAATTGCAACTGGTG 313435 >seq76 Length=330973 Score = 149 bits (164), Expect = 1e-30 Identities = 356/529 (67%), Gaps = 12/529 (2%) Strand=Plus/Minus Query 193671 AGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGA 193730 || |||||| | || || || ||||| || ||||| | |||| |||| | | || Sbjct 238958 AGCCATGTTCATGTGAGTTTCGAAATGCCGGAATATACGGCGAATGCGGATGGTATCGGG 238899 Query 193731 ACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTAT 193790 || | || | || ||||| | || || ||||| ||||||||| | | || ||| Sbjct 238898 ACATTAAGGCTCCTGGAAGCCATACGGATTTTGGGTATGGAGAAAAAAACCAGAATATAT 238839 Query 193791 CAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACT-CCACTATCAGAAACCAC 193849 ||||| ||||| ||| |||||||| || | |||| | || | | ||||| || Sbjct 238838 CAGGCCTCTACTTCTGAATTGTATGGTTTGGTGC-AGGCGGTTCCCCAAAGTGAAACGAC 238780 Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909 || ||| |||| | |||||||||| || || || |||||| || ||||| | Sbjct 238779 GCCGTTTTATCCCAGGTCTCCTTATGCAGTGGCCAAAATGTATGCCTACTGGATTACGGT 238720 Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATC 193969 ||||||||||| | ||| | ||||| || ||| ||| | |||||||| ||| Sbjct 238719 AAATTATCGTGAAGCTTATAACATGTACGCTTGTAATGGGATTTTATTCAATCATGAAAG 238660 Query 193970 TCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTC 194029 || |||||| || || ||||| || || || ||||| | | | | || || | Sbjct 238659 CCCTTTAAGAGGAGAAACTTTTGTGACCCGAAAAATTACCCGTGCAGCAGCGAAAATTGC 238600 Query 194030 TGTTGGATTACAGAAGATTCTTTATCTT--GGTAATCTTA-ATGCTAAGAGGGATTGGGG 194086 | ||| | |||| ||| ||||| || ||||| |||| || || | || ||||| Sbjct 238599 CTTGGGACTTCAGA--ATTGTTTATATTTAGGTAA-CTTATCAGCGCAGCGTGACTGGGG 238543 Query 194087 ACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGA 194146 ||| || || |||||| | ||||| |||||||| || | || ||||| || | || || Sbjct 238542 ACATGCTAAAGATTATATCGAAGCCATGTGGTTGATCCTTCAGCAGGAAAAAGCAGAAGA 238483 Query 194147 TTATGTGATTGCTACAGG--TGAACAGTATTCTGTTAGAGACTTTGTGA 194193 | ||||||||| ||||| | | || || |||| | || ||||||| Sbjct 238482 CTTTGTGATTGCAACAGGGATTACCACTA--CTGTCCGTGATTTTGTGA 238436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807420116203920