Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq232 228 9e-55 seq2491 109 6e-19 seq2141 100 3e-16 >seq232 Length=384298 Score = 228 bits (252), Expect = 9e-55 Identities = 632/960 (66%), Gaps = 41/960 (4%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || ||| | |||||| || ||||| || ||||| | | ||| || Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 21245 TCCATAAAATCAAATGGATTTTCAGATT--TAAATATTTTATTACAACCCAGTTCTGATA 21302 ||||| ||||| ||||||||| | ||| |||| | | ||| |||| |||| || Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTC--ACAGCCCAATTCTACTA 339373 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||||||||| || || || |||| ||| || ||| | || |||||||| || | Sbjct 339372 ATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTA 339313 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | |||| ||||||| || ||| | ||| | |||| ||| | || || ||||| | Sbjct 339312 AACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATAA 339253 Query 21423 TATTTATTATCCTAGATGT----ACTAGGGGGATACAATAATTGT--TTAAACA--TCAA 21474 | | | | || ||| | | ||| | ||| | ||| || || || | || Sbjct 339252 TTTCTTTAATTCTATCTTTTGGCACTTTGTT--TACCA-AATGGTGATTGTGCAGGTGAA 339196 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 | |||||||||||||| | |||||| || | | || ||||||||||| |||||||| Sbjct 339195 CC--GCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAA 339138 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 ||| |||||||| || | ||||| |||||| | ||||| || ||||| || || || Sbjct 339137 ACCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAA 339078 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG---TAGATTCTTTATC 21651 || || ||||| |||||||| |||| || || |||| | ||| |||||| Sbjct 339077 GATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAGATTC------ 339024 Query 21652 CAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGC 21711 ||||||||| ||||||| ||| |||| ||||| | || || | ||| Sbjct 339023 ---GATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGC 338967 Query 21712 TTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 || || | | |||||| || | || ||| | ||| Sbjct 338966 ATTAAACAACTCTGATTTTTCTGCTTCGTCTTTTACATACGTATCAATTAATAAAGAATA 338907 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGA 21831 | ||| || ||||| || ||| ||||| || || ||||| | |||| || | Sbjct 338906 AGTCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGC 338847 Query 21832 ACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGG 21890 ||||||||||| || ||||| | ||||| ||||| ||||| ||||| || | Sbjct 338846 GTATTGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAG 338788 Query 21891 CGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT---- 21946 | ||||||||||| || |||| ||| || ||||| ||||||| || |||| ||| Sbjct 338787 CAGCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTC-ATTAAGTTTATTA 338729 Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATA 22006 ||||||||| |||||| | |||||| | |||||| | ||||| || ||||| | Sbjct 338728 TTCCAATCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGC--TT 338671 Query 22007 GCCTTTTTATACATAAT--CCAGATATCATTATATATTATTGGAAATATTACAAACCTGT 22064 | ||||| || | || ||| ||||||| || | | || ||||| || || || | | Sbjct 338670 CCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAAACGAT 338611 Query 22065 TATTTGATTCAACTAAAAGTGGTTCCA-TTGATAAAAAATATTATTTTTTACATATTTAT 22123 | || ||| ||| | |||||| | |||| | | | | | ||| || || ||||| Sbjct 338610 TTTTATTTTCTTGTAAGATTGGTTCTACTTGAGACATGACAATTTTTGTTTAATTTTTAT 338551 >seq2491 Length=10632 Score = 109 bits (120), Expect = 6e-19 Identities = 300/454 (66%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||||||||||||| || | ||| || || ||||| || || |||| || || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||||||||||| ||||| | | | ||||||| || |||||||||| | Sbjct 4805 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 4746 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||| ||||| ||||| || ||||| || |||| | || |||||| ||||||| Sbjct 4745 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 4686 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 || || | || | ||| | ||| ||||| || || || || || | Sbjct 4685 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 4626 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAATAATTG-----TTTAAACATCAAACA 21477 | | || | | || | || || | || ||| |||| | | || || Sbjct 4625 T-TCCATGAAC---GACTTCCT-GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCA 4571 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||| |||||||||| || ||||| || || || |||||| ||| |||| || Sbjct 4570 GGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCC 4511 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG-AAAAGAAAA 21596 ||||| | ||||| ||||| ||||| || || || || | ||||| | ||||||| Sbjct 4510 TGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGA-ACAGAAGCTCCCGCTGAAGAAAA 4452 Query 21597 TGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 |||| || || || || || || || || ||||| Sbjct 4451 TGCCTTCCACTGCGGCGAAAGCCACCAAACGTTC 4418 >seq2141 Length=1138 Score = 100 bits (110), Expect = 3e-16 Identities = 186/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||| | || ||||| |||||||| || || || || || || || |||||||| || Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 21827 TCTGAACATTGAACCTCGGAATAAAATC-GTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | ||| ||||| || |||| | || |||||||| ||||| || || ||||| Sbjct 131 TCAGGGATTTGGACCTCTGACATGAATCTGGTG-GCCAAGTTCTCATTGACGATACCATC 189 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 |||||| ||||| || ||||| | ||| | ||||| | ||||| || || | | || Sbjct 190 ACTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAGTGACGTTCATTGTCATTGAGCTT 249 Query 21946 TTT---CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 || ||| || | || ||| | |||| || || | ||||||||||| || Sbjct 250 GTTCTCCCATTCGTTGATGTCACTTGCAAGGTCTATCTCCTCTGCAGTCCAAAAGCTTGC 309 Query 22003 AATAGCCTTTTTATACATAATCCAGATATC 22032 |||||| || || | | |||| ||||| Sbjct 310 TTCAGCCTTCTTGTAGAGATTCCATATATC 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531811826293680