Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1158 104 2e-17 seq444 91.5 1e-13 seq232 82.4 7e-11 >seq1158 Length=25781 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | |||||| | || ||||||| | Sbjct 9479 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCC 9420 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | ||||| |||||| || || || || || || ||||||||| Sbjct 9419 GATACCATCGAGAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 9360 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||||||||||||| |||| | | || |||||| ||| Sbjct 9359 CAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAAC 9300 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || |||| || ||| Sbjct 9299 ATTCAAAAGGAGTCAACCCTTCACTTGGTG 9270 >seq444 Length=38654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 23984 AAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 |||||| ||||||| | ||||| ||||| | || || || | |||||| | || |||| Sbjct 4809 AAACAACAATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCG 4868 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 ||| ||| || |||||| | ||||| ||||| ||||| || || || || | Sbjct 4869 AGGGTTCCGATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCAC 4928 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 | || ||||| | || || | | |||||||||||| || |||| | | || || Sbjct 4929 CTGACCAACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCG 4988 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||| ||||| ||||| || || || |||| || || Sbjct 4989 ATTACAACATCCAAAAGGAGTCCACTCTTCACTTGGT 5025 >seq232 Length=384298 Score = 82.4 bits (90), Expect = 7e-11 Identities = 169/249 (68%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 133013 TATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACAC 133072 |||||| || |||||||| ||||| || | || || ||||| || | |||||| Sbjct 340925 TATAATTTTTCGAATTCTTCACCATAAACATCATATAATCCCGGACATTCATTTGGACAC 340866 Query 133073 ATCAATGACCATTTT---TCT-CCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCA 133128 || || | ||| || ||| |||| || | |||||||||||| | ||||| Sbjct 340865 ATTAAAGTCCAAGTTGAATCTTCCTGA----ACACGTTTCATGAACAAATCTGAAGTCCA 340810 Query 133129 CATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTC 133188 |||||| || |||||||| | || ||| ||||| || ||||| || || || Sbjct 340809 CATGGCGAAGAATAAATCTCTTGCACGCATTTCTTCTTTTCCTGTATTTTTCTTTAAATC 340750 Query 133189 CaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCT 133248 ||| ||| |||||| || |||||||| | ||||| || | || ||| ||||| | Sbjct 340749 CAAGAAATCAAAAATATCAGCATGCCAGGTTTCGATGTAAATTGCAAAACTACCTTTACG 340690 Query 133249 TTTACCTCC 133257 ||| || || Sbjct 340689 TTTTCCGCC 340681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429865880394210