Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1158 125 7e-24 seq444 113 4e-20 seq60 105 6e-18 seq32 91.5 1e-13 >seq1158 Length=25781 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| |||||||||||||||||||||||| Sbjct 9253 CCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 9312 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || |||||||| ||| |||| | ||| || || || || ||| Sbjct 9313 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 9372 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||||| | ||| | ||||||| ||||| Sbjct 9373 ATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACC 9432 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || || || || |||||||||||||| Sbjct 9433 TCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || ||||||||||| |||||||| ||| Sbjct 9709 CCACCACGGAGACGGAGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 9768 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || || |||| | ||| || ||||| || ||| Sbjct 9769 AGGGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG 9828 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | ||| | ||||||| ||| | Sbjct 9829 ATACCCTCCTTATCTTGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 9888 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || ||||| || || |||||| Sbjct 9889 TCCAAGGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCATG 9936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| |||||||||||||| ||||| ||| Sbjct 9481 CCTCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAG 9540 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| ||||| || ||||| || || Sbjct 9541 AGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGA 9600 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | ||| | || || | ||| | Sbjct 9601 ATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACC 9660 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| |||||||| || || || || ||||| ||||| Sbjct 9661 TCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 >seq444 Length=38654 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || ||||||||||| |||||||||||| Sbjct 5043 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAG 4984 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| || |||| | ||| || ||||| || || Sbjct 4983 AGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGA 4924 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | |||||||| ||||| Sbjct 4923 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACC 4864 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || |||||||| || || || ||||| Sbjct 4863 TCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCAT 4817 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| ||||||||||| |||||||||||| Sbjct 5499 CCACCACGGAGACGAAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAG 5440 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| || |||| | ||| || ||||| || ||| Sbjct 5439 AGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGG 5380 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | ||| | |||||||| |||| Sbjct 5379 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACC 5320 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || || || || ||||| || ||||| Sbjct 5319 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||||||||| |||||||| || Sbjct 5271 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 5212 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| | ||| || ||||| || ||| Sbjct 5211 AGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGG 5152 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || | ||||| Sbjct 5151 ATACCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACC 5092 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || || || ||||| || ||||| Sbjct 5091 TCAAGAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 >seq60 Length=27343 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| ||||||||||| |||||||| || Sbjct 11515 CCACCACGAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAA 11574 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || ||| |||| | ||| || ||||| || ||| Sbjct 11575 AGGGTGCGACCATCCTCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGG 11634 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | ||| | || || | | ||||| Sbjct 11635 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACC 11694 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || || || | || || ||||| ||||||||| Sbjct 11695 TCGAGTGTGATGGTCTTTCCTGTCAATGTCTTAACGAAGATCTGCATG 11742 >seq32 Length=13759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 350/546 (64%), Gaps = 9/546 (2%) Strand=Plus/Plus Query 144754 CAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACGTCAT 144813 ||||||||||||||| || || || ||| ||| | |||| ||| || || || | Sbjct 2791 CAAATAGTACATGCCAGTCTTAAGACCCTTCTTCCATGCGTAGAAGTGCATTGAGGTGAG 2850 Query 144814 CAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGAAAGC 144873 | || | ||||||| || | ||| | || | || || |||||| ||||| || Sbjct 2851 CTTGGCAAAGTTGGGCTCGGCAATAAAGACGTTGAATGACTGTGATTGATCGATGAAGGC 2910 Query 144874 GTTGCGGTCGGCGGCCATCTCAATCA---TACGTTTGCATTTCATTTCCCAAGCGGTCTT 144930 || ||||| ||||| ||||| | |||||| | || ||||| | ||||| Sbjct 2911 ACCACGATCGGCAGCCATGTCAATGAGACTACGTTGACGGATC---TCCCAGACAGTCTT 2967 Query 144931 GTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGTGCGC 144990 |||||| || | || || || ||||| | ||| || || || || || Sbjct 2968 GTACAACTCCTTCAAGTCCTCGGGGATGCCTGGTACGTTCTGGATGGAACCACGGTTGGC 3027 Query 144991 AAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAATTAA 145050 | ||| |||| ||| || | || ||| | || | ||| ||| || Sbjct 3028 GATGATGTGGTTCTTCATCTCTGGGGTCCACAAGCCAAGGGCCATGAGATCGGCAAGCAA 3087 Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 | || |||||||| ||||| || |||||||||||||| | || | ||| || || Sbjct 3088 CTGCTTGTTGACGACGGTGAACTCTCCAGCCAACACACGACGAGAGTAGATGTTGGAGGT 3147 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | | || || || ||||||| ||||| ||||| || | ||| | || ||||||||| Sbjct 3148 GTATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTTGAGGCAGTGGGCATGGG 3207 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || | | || || ||||| || |||| ||| ||||| |||| || | ||| Sbjct 3208 GGCAATGAGCAAGGAGTTGCGGAGACCGTTCTTGACGATGTTGGCCTTGAGACCAGTCCA 3267 Query 145231 ATCCCA--TAGCGAAGTCGGCCTCA-CGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || | || | | || || |||||||||||| || | || |||| | Sbjct 3268 GTCCCAACGAGGGGAGGGGACGACACCGGGCCACATGTCGTATTGGAGGATACCCTTGGA 3327 Query 145288 GGCGGG 145293 |||||| Sbjct 3328 GGCGGG 3333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471933844058880