Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1158 116 2e-21 seq371 109 4e-19 seq445 87.8 1e-12 seq446 84.2 1e-11 >seq1158 Length=25781 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| ||||| || |||||||||||| |||||||| | Sbjct 9251 TACCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGG 9310 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||| || ||||| || || || ||||||||||||| | Sbjct 9311 AGAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTG 9370 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || || ||| || ||| || |||| || ||||| || || | Sbjct 9371 GGATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGA 9430 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 9431 CCTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 38082 CAATCATT-ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140 |||| ||| |||||| | | ||| | || | ||| |||||| ||||||||| || || Sbjct 9015 CAATTATTGACCACCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTT 9074 Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200 ||| || || | ||| |||| || | ||| || || ||||| || || |||||||| Sbjct 9075 GTAGTCGGAAAGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTG 9134 Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCC 38260 ||||| |||| || || ||||| ||| || ||| || |||| || ||||| Sbjct 9135 ATCGGGTGGGATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGA 9194 Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || | || || || ||||| |||||||| || || || || ||||| Sbjct 9195 ACCCTCAACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 >seq371 Length=13317 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | |||| ||||| || |||||| | Sbjct 9304 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGTGTGGTAGTTAGGGACAGTGGGAATCTCAT 9245 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 9244 TTATCCATTCATGCGCGTCACTAATTAGATGACGA 9210 >seq445 Length=5314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 19943 ATTTCTCTC---TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCG 19999 ||||| ||| | |||| |||||||||| ||||||||||||||||| |||| |||||| Sbjct 2699 ATTTCACTCCGTTATTCACGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCG 2640 Query 20000 GTCTCGCGGTAATATTTAGCCTTA 20023 ||||| | | | |||||||||||| Sbjct 2639 GTCTCTCAGGAGTATTTAGCCTTA 2616 >seq446 Length=116643 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||||| | | | |||||||| Sbjct 2896 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGC 2837 Query 20020 CTTA 20023 |||| Sbjct 2836 CTTA 2833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334892572414442