Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq132 188 3e-43 seq9105 185 4e-42 seq964 156 2e-33 seq8692 147 1e-30 >seq132 Length=332281 Score = 188 bits (208), Expect = 3e-43 Identities = 402/598 (67%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 65450 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGT 65509 |||| ||||| | || || || ||||| || ||| || || ||| |||| || Sbjct 246290 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 246231 Query 65510 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65569 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 246230 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 246171 Query 65570 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65629 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 246170 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 246111 Query 65630 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 65689 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 246110 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 246051 Query 65690 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 65747 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 246050 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 245993 Query 65748 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 65807 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 245992 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 245933 Query 65808 GCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 65867 ||||||| || | |||| ||| | ||||| || | | |||||||| | | Sbjct 245932 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 245873 Query 65868 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 65927 || |||||||||| ||| | ||| || || ||||| ||||||||||| || Sbjct 245872 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 245816 Query 65928 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65987 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 245815 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 245756 Query 65988 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66045 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 245755 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 245698 >seq9105 Length=354 Score = 185 bits (204), Expect = 4e-42 Identities = 193/250 (77%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 65700 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 65759 || ||||| ||||||| |||||||| || ||||| ||||||||| |||| ||||| || | Sbjct 246 TCATCGTCATTGACTCCGTGGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGG 187 Query 65760 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTG 65819 | ||| |||||||| ||||| ||||| |||||||||||||| |||| |||||||| | Sbjct 186 GCGACTCGCACGTCGGTCTGCAGGCGCGACTCATGTCGCAGGCGCTGCGTAAGCTCACCG 127 Query 65820 G-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 65878 | || |||| ||||||||| || | ||| |||||||| | |||||||||||| Sbjct 126 GTGGCCTGAACCAG-ACCAACACGACGATGATCTTCATCAACCAGCTTCGCGAGAAGATC 68 Query 65879 GGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 65938 || ||| || |||| || |||||| ||| | || || ||||| ||| ||||||| Sbjct 67 GG---CGTCTTCTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGAAGTTCTAC 11 Query 65939 GCCTCAGTCC 65948 ||||| |||| Sbjct 10 GCCTCGGTCC 1 >seq964 Length=324 Score = 156 bits (172), Expect = 2e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 65929 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 65988 || |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || Sbjct 1 GAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAAC 60 Query 65989 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 66048 || || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| Sbjct 61 CGACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTT 120 Query 66049 CCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCT 66108 | | ||||||||| | || | ||||| | |||||||| ||||||| | || | Sbjct 121 CAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGAT 180 Query 66109 CGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66164 |||| | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 181 CGACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 236 >seq8692 Length=1388 Score = 147 bits (162), Expect = 1e-30 Identities = 293/425 (69%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 65390 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TA 65448 || || ||||| |||||||| || | ||||| ||| || ||||| || || | Sbjct 968 GTCGAGGTCATCCCCACCGGTTCGCTGATGCTGGATATCGCACTCGGCATTGGTGGACTG 1027 Query 65449 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATG 65508 ||| |||||| | || || ||||||||||| || ||||| || || ||| | || || Sbjct 1028 CCCAAGGGGC-GTGTCGTTGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGAC 1086 Query 65509 TCTCCACGCGGTGGCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTG 65567 || || || | ||| ||||| |||||| || |||| ||| |||| ||||||||| | Sbjct 1087 CCTGCAGGCCATTGCCGAATGC-CAGAAGAAGGGCGGCACCGCTGCCTTCATCGACGCCG 1145 Query 65568 AGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 65627 |||| | |||||||| |||||| ||| || ||| || | ||| |||| || Sbjct 1146 AGCATGCACTGGACCCGATCTACGCCGCCAAGCTGGGCGTGAACGTGGACGACCTGCTGC 1205 Query 65628 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 65687 || ||||| || || || |||||||| ||||| |||| ||| | || || ||| Sbjct 1206 TGTCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGGTCCA 1265 Query 65688 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 65747 || | || ||| || || || ||||| || || || ||| || ||||| ||| Sbjct 1266 GCTCGGTGGACATTGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCG 1325 Query 65748 AAGGCGACATCGGGGA-CAG-TCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 65805 ||||||| || || || ||| | || |||||||| || || || ||| ||||| | Sbjct 1326 AAGGCGAAATGGGCGACCAGCTGCCG--GGCCTGCAGGCCCGTCTGATGAGCCAGGCGCT 1383 Query 65806 GCGCA 65810 ||||| Sbjct 1384 GCGCA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238181947825288