Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1158 125 6e-24 seq444 123 2e-23 >seq1158 Length=25781 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | |||||||| ||||||| |||| || ||| ||| Sbjct 9707 ATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCT 9648 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| | || | ||| ||||| || || |||||||||||||| Sbjct 9647 GACACCATCGAGAACGTCAAGACCAAGATTCAA-GACAAGGAGGGTATTCCACCTGACCA 9589 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || | || |||| ||| ||| | ||| ||||| Sbjct 9588 ACAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAA 9529 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || ||||| || ||| | || || Sbjct 9528 TATTCAAAAGGAGTCCACCCTCCATCTCGTCCT 9496 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| |||| || || ||||||| | || || ||| || Sbjct 9935 ATGCAAATCTTTGTAAAGACACTGACTGGCAAGACCATCACCTTGGAGGTTGAGGGTTCC 9876 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| | ||| || ||| || || || || || |||||||||||| Sbjct 9875 GATACCATCGAGAACGTCAAGACCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 9816 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || ||| | || |||| |||||| | ||| ||||| Sbjct 9815 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACCCTTTCCGACTACAAC 9756 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || || || || || Sbjct 9755 ATCCAAAAGGAGTCCACTCTCCACTTGGTTCT 9724 >seq444 Length=38654 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| ||||| || ||| |||| || || | || || | || || ||| Sbjct 4813 AACAATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGG 4872 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||||||| | ||| || ||| ||||| || || ||||||||||| Sbjct 4873 TTCCGATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCTGA 4932 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || ||||||||||| ||| | || |||| ||| ||| | |||||| Sbjct 4933 CCAACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTA 4992 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| || ||||| || || || || || Sbjct 4993 CAACATCCAAAAGGAGTCCACTCTTCACTTGGTTCT 5028 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| ||||||| | || || || || Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||||||| | ||| || ||| ||||| || || || |||||||||||| Sbjct 5333 GATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAA 5392 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| ||| | || |||| ||| ||| | ||||||||| Sbjct 5393 CAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAAC 5452 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||| | || || Sbjct 5453 ATCCAAAAGGAGTCCACCCTCCATCTCGTTCT 5484 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| ||||| ||||||| |||| || ||| ||| Sbjct 5501 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAGGTCGAGGGTTCT 5560 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| ||||| || || || ||||||||||| Sbjct 5561 GACACCATTGAGAATGTCAAGACCAAGATTCAA-GACAAGGAGGGTATCCCACCTGACCA 5619 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || ||| | || |||| ||| || | || ||||| Sbjct 5620 ACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAA 5679 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || || || || || Sbjct 5680 CATCCAAAAGGAGTCCACTCTTCACTTGGTTCT 5712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| ||||||| | || || ||| ||| Sbjct 5045 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTCGAGGGTTCT 5104 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| || |||||||||||| Sbjct 5105 GACACCATTGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 5164 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || || | || |||| ||| ||| | || ||||| Sbjct 5165 CAACGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTTTCTGACTACAAC 5224 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||| | || || Sbjct 5225 ATCCAAAAGGAGTCCACTCTCCATCTCGTCCT 5256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433257327182330