Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq295 89.7 6e-13 seq126 86.0 7e-12 seq5 86.0 7e-12 >seq295 Length=92670 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 107552 CGAGAAACAAGTATATCGCATTGACCATTATCTCGGTAAAGATACTGTCAATAACATTCT 107611 ||| |||||| | || | ||||||||||| || || ||||| || ||| | |||||| | Sbjct 2963 CGAAAAACAAATTTACAGGATTGACCATTACCTGGGCAAAGAAACCGTCCAGAACATTAT 2904 Query 107612 TGCTACTCGCTTCAGCAACAT-TCTTCTTGAACCACTTTGGAACAGGCAGTATGTAGAAG 107670 || || || |||| | ||| || ||||| || ||||||||| ||| | || Sbjct 2903 GGC-CTTCCGTTTTGCAAATTCTCTACTGGAACCGCTCTGGAACAGGACTTATATTGACC 2845 Query 107671 AAGTGCAGATCTTTGCGTCCGAGACTATTGGTTG-TGAGGGTCGTGCCCAGTATTATGAG 107729 | || ||||| | | | |||| || ||| || || || |||| ||||| || Sbjct 2844 ACGTTCAGATATCGGTGACCGA-ACAGCTGGGTGTTGGGGACCGTGGTGGCTATTACGAA 2786 Query 107730 ACCGCTGGTGCTGTCAGGGATATGCTGCAGAATCACATTCTGCAAGTGTTGGCATTGATA 107789 | ||| |||||| | ||||| ||| | ||||| |||||| ||||| || | |||| Sbjct 2785 AGCGCCGGTGCTTTAAGGGACATGATCCAGAACCACATTTTGCAATTGCTATGTCTGATT 2726 Query 107790 GCAATGGAAGCACCT 107804 | ||||||| | ||| Sbjct 2725 GGAATGGAAACCCCT 2711 >seq126 Length=461790 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 15972 AGGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCG 16028 ||||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||||| Sbjct 441732 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 441791 Query 16029 ATCCCCTCTTCGCCCA 16044 | |||||| ||||||| Sbjct 441792 AACCCCTCATCGCCCA 441807 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 15972 AGGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCG 16028 ||||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||||| Sbjct 441962 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 442021 Query 16029 ATCCCCTCTTCGCCCA 16044 | |||||| ||||||| Sbjct 442022 AACCCCTCATCGCCCA 442037 >seq5 Length=514667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 15972 AGGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCG 16028 ||||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||||| Sbjct 79455 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 79514 Query 16029 ATCCCCTCTTCGCCCA 16044 | |||||| ||||||| Sbjct 79515 AACCCCTCATCGCCCA 79530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567137116267200