Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq93 87.8 2e-12 seq16 82.4 8e-11 >seq93 Length=584700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 141068 GAGCTTTTTAGTTGTTACTGCAGGAAAACCTTTGGTTAAATCCCAACGCAATTTAGTACC 141127 ||| ||||| || || || || ||||||| ||||||| |||||| | | ||| | Sbjct 272812 GAGTTTTTTTGTCGTAACCATTGGGAAACCTTCACTTAAATCAAAACGCA-TCTGGTAGC 272870 Query 141128 GAACAAAGCAATT-GTTCCTGTGCCTGTTCGGTCATCAGTTTCGTAGCCATTTTCAAAAA 141186 || || | || |||||||| |||||||||||| | ||| | ||| ||||| |||| Sbjct 272871 CAAAAACACTTTTCGTTCCTGTTCCTGTTCGGTCACCTTTTTGATTGCCGTTTTCTAAAA 272930 Query 141187 TGTCTTTAATTAAATCTTGGTATTGTTTCATT 141218 || ||| | ||||||| ||||||||||||| Sbjct 272931 CGTATTTTACTAAATCTAAGTATTGTTTCATT 272962 >seq16 Length=320404 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 67491 CAGAAGGATTCTAACCTTCAACCTACGGATTAGAAGTCCGTTGCTCTATACAATTGAGCT 67550 ||||||||||| ||||||| ||||||| ||||||||| ||||||||||| || |||||| Sbjct 239914 CAGAAGGATTCGAACCTTCGACCTACGCATTAGAAGTGCGTTGCTCTATCCAGCTGAGCT 239855 Query 67551 ATG 67553 ||| Sbjct 239854 ATG 239852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530631223812000