Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq232 244 1e-59 seq2491 176 5e-39 seq2141 105 7e-18 seq915 104 3e-17 >seq232 Length=384298 Score = 244 bits (270), Expect = 1e-59 Identities = 615/914 (67%), Gaps = 32/914 (4%) Strand=Plus/Minus Query 92785 TTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTT 92844 || ||||| ||||| | ||||| || || |||| ||||||||||||||| || ||| Sbjct 339508 TTGTTCATCACACCTGACTTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTT 339449 Query 92845 CCTTCCAAAGATATCGAATTCACTAGT--GATTGGATT--CTTGGCGTTATAATACTTTT 92900 || | | || ||| || || | || |||||| || | || || || | Sbjct 339448 CCCTGAAGTGAAATCATATCCATGAAATCGAATGGATTTGCTGATCCGTA-AACACGCT- 339391 Query 92901 CACCGATCAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAA 92959 ||| | ||| || ||| ||||||||||| || || || |||| ||||| | ||| | | Sbjct 339390 CACAGCCCAATTC-TACTAATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGA 339332 Query 92960 TCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATT 93019 || ||||| || | | || ||| || |||| || || | || | | | ||||| Sbjct 339331 CCAGCGTTCATACCAATTAAACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATA 339272 Query 93020 ACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATA- 93078 | | || || | |||||| | | |||| ||||| ||| | ||| | || Sbjct 339271 TCTAAAGCATCGACAATAATTTCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGG 339212 Query 93079 --ATTGTACAT-TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135 ||||| || | | | |||||| || ||||| ||||||||| || || ||||| || Sbjct 339211 TGATTGTGCAGGTGAAC-CGCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTC 339153 Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 ||| ||||||||||||||| | | || ||||| || | |||| | |||||| || Sbjct 339152 ATTAGAGAATGTTAAACCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAA 339093 Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255 | || || ||||| || ||||| || || ||||| || | | | ||| ||||| Sbjct 339092 AGCTCCCGAGAAAAAGATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAA--- 339036 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 |||| | |||||||||||||||||| || |||||||||||||| ||| | Sbjct 339035 ---TGAATCAGATTCGATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAA 338979 Query 93316 TGTTTCGATAGCGTTAAATA--GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 ||| | ||| ||||| | | || | || | || ||| || || ||||| Sbjct 338978 AACTTCTAAAGCATTAAACAACTCTGATTTTTCTGCTTCG--TCTTTTACATACGTATCA 338921 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 ||||| | |||||| | ||| || | ||||||||| || ||||| || || || Sbjct 338920 ATTAATAAAGAATAAGTCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAG 338861 Query 93434 CATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGAC 93492 | | ||||| | | || || || || | ||||| |||| | |||||||| || || Sbjct 338860 AACTTTGCTTCGGCGTATTGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTAC 338802 Query 93493 TATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC 93552 || || || || || |||||||| || || ||||| || || |||| || || || Sbjct 338801 GATTCCGTCTGAAGCAGCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTC 338742 Query 93553 TTTAAG---CTTATCCCAATCGGATAGAT-CTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 ||||| |||| |||||| | || || || || || ||||| ||||||| |||||| Sbjct 338741 ATTAAGTTTATTATTCCAATCTGTTAAATCCTGATGTAA-ATCGATTTCTTCGGCAGTCC 338683 Query 93609 A-AAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAAT 93667 | |||| | ||||| |||||| ||| ||||| || || |||| || || ||||| Sbjct 338682 AGAAACTA-GCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAA 338624 Query 93668 ATGACAAAACGATT 93681 || || |||||||| Sbjct 338623 ATAACGAAACGATT 338610 >seq2491 Length=10632 Score = 176 bits (194), Expect = 5e-39 Identities = 396/590 (67%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || ||| | || || |||| || ||||||||||| || || |||| Sbjct 4573 GCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAG 4514 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||||| | ||| |||| ||| || | ||| || || ||| || || || || || Sbjct 4513 CCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAA 4454 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || |||||||| || || || ||||| | |||||||||||||||| || | | Sbjct 4453 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA----- 4399 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| || ||||| || ||||||||||| | |||||| | || || | || | Sbjct 4398 -ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 4340 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || || ||| || || | |||| || || |||||||| | ||| | ||| | Sbjct 4339 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 4280 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||||| |||| || ||||| || ||||| || || ||||| | ||||| | | Sbjct 4279 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 4220 Query 93451 CTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | | || | || || | || |||||||| || || || || ||| | Sbjct 4219 CTGTACTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAG 4161 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAA 93568 |||||||||| | |||||| || ||||| ||| | | |||||| || ||||| Sbjct 4160 CAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAG-TTGTCCCAG 4102 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | || | ||||| || | |||||| | ||||| || |||||| || Sbjct 4101 TGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTC 4042 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || ||||| ||||| || || | |||| ||| || || | ||||| || Sbjct 4041 TTATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAAGCG 3992 >seq2141 Length=1138 Score = 105 bits (116), Expect = 7e-18 Identities = 182/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || ||||| | ||| || || ||||||||||| || ||||||||||||||||| | ||| Sbjct 80 TCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCTTCAGGGATT 139 Query 93452 TGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || || || ||| | ||||| | | || |||||||| |||||||| || || Sbjct 140 TGGACCTC-TGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATCACTGGCAGC 198 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCA 93567 ||| |||||||| | | | ||||| || |||| || || ||| || ||||| Sbjct 199 AAAGAAAGCCAAGACGTTTGTAATAAAGTGACGTTCATTGTCATTGAGCTTGTTCTCCCA 258 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| | || ||| ||| || | || || |||||||||| |||||| || || Sbjct 259 TTCGTTGATGTCACTTGCAAGGTCTATCTCCTCTGCAGTCCAAAAGCTTGCTTCAGCCTT 318 Query 93628 TTTGTACATATCCCATATGTC 93648 ||||| | || |||||| || Sbjct 319 CTTGTAGAGATTCCATATATC 339 >seq915 Length=13476 Score = 104 bits (114), Expect = 3e-17 Identities = 181/258 (70%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | || || |||||||| || | ||| ||||| || || | ||| || Sbjct 297 TGTAGAGCAAACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAG 238 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 |||||| || || || | || || || |||||||||||||| | || |||| || ||| Sbjct 237 AGAATGTCAATCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTA 179 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTG 93257 ||| ||||| ||||| || || |||||||| || || | ||| || ||||| | || Sbjct 178 CCACTGAAAAAGATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGACTT- 120 Query 93258 CGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 ||| | || | |||||| | | |||||| || || || ||||| | ||| || | | Sbjct 119 -GGAGT---TGGTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGG 64 Query 93318 TTTCGATAGCGTTAAATA 93335 | ||||| || ||||||| Sbjct 63 TCTCGATGGCATTAAATA 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556767651109680