Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1158 141 8e-29 seq444 141 8e-29 seq60 118 9e-22 seq974 91.5 1e-13 >seq1158 Length=25781 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | |||||||| || ||||||| || || || | Sbjct 9707 ATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCT 9648 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || |||||||||||||||||||||||||| || ||| Sbjct 9647 GACACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAA 9588 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || ||| | |||||| || || ||||||| ||||| Sbjct 9587 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAAT 9528 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || |||||| | ||| | || | || | || |||||| Sbjct 9527 ATTCAAAAGGAGTCCACCCTCCATCTCGTCCTTCGTCTCCGTGGAGGT 9480 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || ||||| || |||| ||||| || || | Sbjct 9251 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTTGAGGGTTCT 9192 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || |||||||||||||||||||| |||||||||||| Sbjct 9191 GATACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCCGATCAA 9132 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || || | ||||| || ||| | ||||| |||||| Sbjct 9131 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACCCTTTCCGACTACAAC 9072 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || ||||| Sbjct 9071 ATCCAAAAGGAGTCCAC 9055 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| || | || | || || || || Sbjct 9479 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCC 9420 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || |||||||| ||||||||||| |||||||||||| Sbjct 9419 GATACCATCGAGAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 9360 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| || | |||||| ||||| |||||||||||||| Sbjct 9359 CAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAAC 9300 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || || ||| | || || || Sbjct 9299 ATTCAAAAGGAGTCAACCCTTCACTTGGT 9271 Score = 123 bits (136), Expect = 2e-23 Identities = 176/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 22202 TTTATACA--TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCAC 22259 ||||||| ||| |||| |||||||| ||||| || || | || || || || |||| Sbjct 9954 TTTATACTATTTTTTAAACATGCAAATCTTTGTAAAGACACTGACTGGCAAGACCATCAC 9895 Query 22260 TCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGA 22319 | || || || |||||||| | || | |||| || || ||||| ||||| Sbjct 9894 CTTGGAGGTTGAGGGTTCCGATACCATCGAGAACGTCAAGACCAAGATCCAAGATAAGGA 9835 Query 22320 GGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCG 22379 |||||| ||||| || ||||||||||| || ||||| || || || | |||||| || Sbjct 9834 GGGTATCCCACCTGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCG 9775 Query 22380 CACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCG 22439 |||| | ||||| |||||||| ||||| || ||||| | || || ||| | || | || Sbjct 9774 CACCCTTTCCGACTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTTCTCCGTCTCCG 9715 Query 22440 CGGAGGT 22446 || ||| Sbjct 9714 TGGTGGT 9708 >seq444 Length=38654 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || |||| ||||| || ||| || Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || ||||||||||||||||| ||||| || ||| Sbjct 5333 GATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAA 5392 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| || | |||||| || || |||||||||||||| Sbjct 5393 CAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAAC 5452 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || |||||| | ||| | ||| | || | || || ||| Sbjct 5453 ATCCAAAAGGAGTCCACCCTCCATCTCGTTCTTCGTCTCCGTGGTGGT 5500 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || || || || | || | || || || || Sbjct 4817 ATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGGTTCC 4876 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || |||||||||||||| |||||||| || ||| Sbjct 4877 GATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAA 4936 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| || | |||||| || || |||||||||||||| Sbjct 4937 CAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAAC 4996 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || ||| | || | || || ||| Sbjct 4997 ATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGT 5044 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || ||||| || ||||||| || || || | Sbjct 5501 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAGGTCGAGGGTTCT 5560 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||||||||| ||||| || ||| Sbjct 5561 GACACCATTGAGAATGTCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAA 5620 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || || | |||||| || ||| | || || |||||| Sbjct 5621 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAAC 5680 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || ||| | || | || |||||| Sbjct 5681 ATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGAGGT 5728 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | || ||||| || |||||||||| || || | Sbjct 5045 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTCGAGGGTTCT 5104 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| ||||| ||||| || ||| Sbjct 5105 GACACCATTGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 5164 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||| | |||||| || || | || || |||||| Sbjct 5165 CAACGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTTTCTGACTACAAC 5224 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || ||||| Sbjct 5225 ATCCAAAAGGAGTCCAC 5241 >seq60 Length=27343 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || || || || || || |||| || || || || | | Sbjct 11741 ATGCAGATCTTCGTTAAGACATTGACAGGAAAGACCATCACACTCGAGGTCGAGGGCTCT 11682 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||||||||| || ||||| ||| Sbjct 11681 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCAA 11622 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || ||||| || || | |||||| |||||| | || || |||||| Sbjct 11621 CAACGTCTTATCTTCGCCGGTAAGCAACTTGAGGATGGTCGCACCCTTTCGGACTACAAC 11562 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || ||| | || | || || ||| Sbjct 11561 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTTCGTGGTGGT 11514 >seq974 Length=18895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || | || ||||| || || | | || ||| | || || |||| Sbjct 5039 ACAGGTAAGACCATTACCCTTGAGGTCGAGGGCTCAGACACCATCGAGAATGTCAAGGCC 4980 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || || ||||||||||||||| | || || || || || Sbjct 4979 AAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAACAACGTTTGATCTTCGCTGGTAAG 4920 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| ||||| || ||| |||| || |||||||| || || || || || Sbjct 4919 CAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCAAC 4867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419659545248830