Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1592 111 3e-19 seq52 111 3e-19 seq1600 107 4e-18 seq1037 107 4e-18 seq826 107 4e-18 seq747 107 4e-18 seq401 107 4e-18 seq32 105 1e-17 seq344 102 2e-16 seq915 89.7 1e-12 seq823 86.0 1e-11 >seq1592 Length=14346 Score = 111 bits (122), Expect = 3e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| Sbjct 11152 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGA 11211 Query 142562 GCCCCACATCGGGC 142575 ||||| ||| |||| Sbjct 11212 GCCCCCCATTGGGC 11225 >seq52 Length=11045 Score = 111 bits (122), Expect = 3e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| Sbjct 6940 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGA 6999 Query 142562 GCCCCACATCGGGC 142575 ||||| ||| |||| Sbjct 7000 GCCCCCCATTGGGC 7013 >seq1600 Length=8420 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 5992 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAGC 6051 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 6052 CCCCCATTGGGC 6063 >seq1037 Length=10012 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 7024 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAGC 7083 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 7084 CCCCCATTGGGC 7095 >seq826 Length=19116 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 11542 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAGC 11483 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 11482 CCCCCATTGGGC 11471 >seq747 Length=11648 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 6719 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAGC 6778 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 6779 CCCCCATTGGGC 6790 >seq401 Length=11145 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 269 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAGC 210 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 209 CCCCCATTGGGC 198 >seq32 Length=13759 Score = 105 bits (116), Expect = 1e-17 Identities = 266/395 (67%), Gaps = 11/395 (3%) Strand=Plus/Plus Query 292989 GATAGCATTTGCCGCGGGCTTAGATCTGACATAATACACAAGTGTTTTAAGACCCTTCTT 293048 ||| |||| || |||| || ||| | ||| |||| || |||||||||||||| Sbjct 2764 GATGGCATCGGCAGCGGCACGAGTTCTCAAATAGTACATGCCAGTCTTAAGACCCTTCTT 2823 Query 293049 CCATGCGTAGAACAGCATAGATGTCA--TAGACTTCAGTGTGGGAGTGGCCAGGAAAAGG 293106 |||||||||||| |||| || || | | | | ||| |||| ||| | || | | Sbjct 2824 CCATGCGTAGAAGTGCATTGAGGTGAGCTTGGCAA-AGT-TGGGCTCGGCAATAAAGACG 2881 Query 293107 TTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTC 293166 || | ||| | ||||||| |||||||||||||| ||||| | |||||| | | | Sbjct 2882 TTGAATGACTGTGATTGATCGATGAAGGCACCACGATCGGCAGCCATGTCAATGA--GAC 2939 Query 293167 TTCATAGA--GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAA 293224 | | | || ||||||||| |||||||||| |||| | || | ||||| Sbjct 2940 TACGTTGACGGATCTCCCAGACAGTCTTGTACAACTCCTTCAAGTCCTCGGGGATGCCTG 2999 Query 293225 TAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCT-CGGACCAA 293283 || |||||||| || || | |||||| || || |||||||||| | ||| || ||| Sbjct 3000 GTACGTTCTGGATGGAACCACGGTTGGCGATGATGTGGTTCTTCA-TCTCTGGGGTCCAC 3058 Query 293284 GTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCG 293343 ||| | || ||||| ||| | | | |||||| |||| |||||| ||||| Sbjct 3059 AAGCCAAGGGCCATGAGATCGGCAAGCAACTGCTTGTTGACGACGGTGAACTCTCCAGCC 3118 Query 293344 AGAGTGCGACGGCTGTAAATGTTCGAAGTG-ATGG 293377 | ||||| ||| ||||| || ||| |||| Sbjct 3119 AACACACGACGAGAGTAGATGTTGGAGGTGTATGG 3153 >seq344 Length=3983 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||||| || || |||| || ||||||| |||||||| Sbjct 1122 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCGAGGCTTTTAACCTCGTGGTCGGGGGTTCGA 1063 Query 142562 GCCCCACATCGGGC 142575 ||||| |||||||| Sbjct 1062 GCCCCCCATCGGGC 1049 >seq915 Length=13476 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| ||||||||||| |||||||||| |||||| || | || || ||||||| || Sbjct 272 GTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAATCCGGGCATCAAGCC 213 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||| ||||| | ||| ||| ||| ||| | | |||||| ||| Sbjct 212 ACGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAAAAAGATACCCTCTACAGC 153 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTG 251997 | | || || | ||||||||||| |||||| Sbjct 152 TGCAAAGGCGACCAAACGCTCAGCAAATGACTTG 119 >seq823 Length=40397 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 218585 TGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGG 218644 ||||||| ||||| || || ||||||||||| ||||| ||||||||||| ||| Sbjct 4368 TGGATGGTCTCAAACCTGGTCAACGTAAGATCCTATTTGCAGCATTCAAGCGTCGTTTGG 4427 Query 218645 TTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704 |||||| ||||| || ||||| ||| | || ||||| | ||| | | | ||||||| Sbjct 4428 CTCAAGAGATTAAAGTAGCTCAATTTGCAGGCTATGTGGCTGAACATACAGCTTACCATC 4487 Query 218705 ACGGTGAGCA 218714 | || ||||| Sbjct 4488 ATGGCGAGCA 4497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027660570314262