Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq444 125 6e-24 seq1158 100 2e-16 >seq444 Length=38654 Score = 125 bits (138), Expect = 6e-24 Identities = 175/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || ||||| |||||||||||| Sbjct 5046 ATACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCG 4987 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| ||| |||||||| || || || |||||||||| |||||||| || Sbjct 4986 GAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGT 4927 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | || |||| ||| Sbjct 4926 GGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCG 4867 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTAA 114389 || |||| ||| | || ||||| ||||||||||| ||||| || |||| | | |||| Sbjct 4866 ACCTCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATTGTTGTTTAA 4807 Query 114390 TTATT 114394 ||||| Sbjct 4806 TTATT 4802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | || || || ||||| |||||||||||| Sbjct 5502 ATACCACCACGGAGACGAAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCG 5443 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| ||| |||||||| || || || |||||||||| |||||||| || Sbjct 5442 GAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGT 5383 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | || |||| |||| Sbjct 5382 GGGATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCG 5323 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || || || || || || ||||| Sbjct 5322 ACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 >seq1158 Length=25781 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || |||||||||||||||||| Sbjct 9250 ATACCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCG 9309 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||| || ||||| || || ||| |||||||||| ||||| || || Sbjct 9310 GAGAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGT 9369 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | || | ||| |||| ||| Sbjct 9370 GGGATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCG 9429 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || || || || ||||||||||| Sbjct 9430 ACCTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420065878967784