Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq32 279 1e-69 seq915 136 7e-27 seq2491 105 1e-17 seq2141 84.2 4e-11 >seq32 Length=13759 Score = 279 bits (308), Expect = 1e-69 Identities = 1212/1896 (64%), Gaps = 62/1896 (3%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 |||| |||| || || | ||||| || |||| ||||||||||| ||||| || | Sbjct 2757 TGAATTGGATGGCATCGGCAGCGGCACGAGTTCTCAAATAGTACATGCCAGTCTTAAGAC 2816 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | | ||| |||| || |||||| | || ||||| | ||| ||| || Sbjct 2817 CCTTCTTCCATGCGTAGAAGTGCATTGAGGTGAGCTTGGCAAAGTTGGGCT------CG- 2869 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| | ||||| ||||| ||||| || |||| ||||| | || || || | Sbjct 2870 ----GCA-ATAAAGACGTTGAATGACTGTGATTGATCGATGAAGGCACCACGATCGGCAG 2924 Query 243921 CCATGGTGATGAGG-TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 ||||| ||||| | | | ||| ||||| | | |||||||| | ||| | | Sbjct 2925 CCATGTCAATGAGACTACGT-TGACGGATCTCCCAGACAGTCTTGTACAACTCCTTCAAG 2983 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 | |||||||| ||| | |||||| | || || || | |||||| ||| | | Sbjct 2984 TCCTCGGGGATGCCTGGTACGTTCTGGATGGAACCACGGTTGGCGATGATGTGGTTCTTC 3043 Query 244040 ATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACC 244099 || | | |||||| ||| | | | || | | | || ||| |||| || || Sbjct 3044 ATCTCTGGGGTCCACAAGCCAAGGGCCATGAGATCGGCAAGCAACTGCTTGTTGACGACG 3103 Query 244100 TGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTC 244159 |||||||| | || ||| || || ||||| |||| | || ||||||| || | Sbjct 3104 GTGAACTCTCCAGCCAACACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 3163 Query 244160 TCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTG 244219 || ||||||| || ||||||| || ||||| |||||||| | | |||| | Sbjct 3164 TCGTTGTTGCCGAGGATCTGCGAGGTTGAGGCAGTGGGCATGGGGGCAATGAGCAAGGAG 3223 Query 244220 TTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAG 244279 || | | |||| | | |||| | |||| | |||||||||| |||| Sbjct 3224 TTGCGGAGACCGTTCTTGACGATGTTGGCCTTGAGACCAGTCCAGTCCCAA-----CGAG 3278 Query 244280 AGGTCCTCGCGTTTGAGGCC---CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336 || | | || || ||||||||| | || || | |||||| | |||| Sbjct 3279 GGGA----GGGGACGACACCGGGCCACATGTCGTATTGGAGGATACCCTTGGAGGCGGGT 3334 Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG---GCCAGCTTACAGCTCTCGTCG 244393 || | || || |||| ||| | ||| | |||| || | | | | Sbjct 3335 GATCCAGGGAAGCTCTCATAGGAACCTT---GCTCGACAGCCATCTCGTTGGACGAGGTG 3391 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC-GCGGGCCTTGCCGCA 244452 |||||||| |||| |||||||| ||| |||||| | | | || | | || | | Sbjct 3392 AGGGCGGCAAAGTATATGGTCTCAGCAATCTCCTTGTTGAGGACTGCAGCGCCAGCAG-A 3450 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 | |||||| | | || |||||||| || || || || || | || || ||||| Sbjct 3451 GTCGAAGGGCAAACGCAAGGCGATGAAGACATCAGCGAGACCTTGGATTCCAATACCGAT 3510 Query 244513 GGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 ||| | ||| ||| |||||||||| || || |||||||| |||||| |||||| Sbjct 3511 GGGACGGTGACGCATGTTGGAGCGACGAGCCTCCTCGACGGGGTAGTAGTTGCGGTCGAT 3570 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | |||||||||||| | |||||| | ||| || ||| || | || |||| | Sbjct 3571 GATCTTGTTGAGGTTTCTGGTGATGACCTTGACCACATCGAACAAGTGTTGGTGGTCGAA 3630 Query 244633 CTCGTAGGGATC--CTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTGGC 244689 | | ||| || || | | | | |||| ||| ||| | ||||||| ||| Sbjct 3631 GTAGGCGGGCTCACCTGGTTGCTTGCCCTCCTTGACATACTTGGGCAGGGCGATCGAGGC 3690 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 || |||||| || || |||||||| | ||||| |||| ||||| ||||| | ||| Sbjct 3691 CAAGTTGCAAACAGCAACCTCCTCTGGTGAAGTGTATTGGATGATCTCAGTGCACAAGTT 3750 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809 ||| ||||||||| |||| || || ||||||||||| ||||| || |||||||| Sbjct 3751 GGAGCATGAGATGGTGCCGAGGTTTTGTTGGTTGGACTTGGCATTGCATGCATCCTTGTA 3810 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCT 244869 | ||| |||| || ||||||| ||||| ||| || | | ||| || || Sbjct 3811 CAAGATGTAGGGAGTACCAGTCTCGATCTGGGACTCGATGATGGCGAACCAAAGATCTTG 3870 Query 244870 AGCCTTGACCGTCCTGCG----AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 |||||||||| | |||| || | || | |||||||| ||||| | | | Sbjct 3871 AGCCTTGACCACCTTGCGGGGAAGACCTGGGGTG-GCCTCGTACTTCAAGTACAAGTCGT 3929 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCG--GGGCACGACGCCGGGCACATGAGACT 244983 |||||| |||| | || | || || || | || | ||||| | | Sbjct 3930 TGAACTCTTGGCCGTACTTGTCAGCGAGACCCTTGGCCTCGTTG--GGGCAGAACAATGC 3987 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 |||||| | | || || | || ||||||||| || || ||||||||||| | ||| Sbjct 3988 CCACTCCTCATTGCGCTCAACACGCTCCATGAAGAGATCTGGAATCCAGAGGGCATAGAA 4047 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | ||| | | | | ||| ||| ||| |||||| | || || | || ||||| Sbjct 4048 CAAGTCACGAGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCAAA 4107 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||||||| ||||||| ||||| | |||||| || | || || ||||| ||| || Sbjct 4108 GACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCTTGCGCTTTCCGCCACC 4167 Query 245164 CTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 ||||| || | | || | ||||||| | || || | || |||| ||||| | Sbjct 4168 TTGGTCGACATAGCGGGC-AGTGTCGTTGAACACACGGAGCATGGGGACTAGACCGTTGG 4226 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 || |||||||||||| |||||||| || | | || ||| | | |||| Sbjct 4227 AGGTGCCGTTGGTGCCGCGGATGTAGGAGCGGGCAGCACGGATCTTGTGCACAGCAATGC 4286 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | || || || |||||||||||| || || ||||| ||||| || |||| Sbjct 4287 CAATGCCTCCAGCAGACTTGGAGATGAGAGCACATTGCTTGAGTGTGTCGTAGATACCCT 4346 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGC 245402 | ||| ||| |||||| | || || ||||||||||||| |||||| | |||| ||| Sbjct 4347 CGATGGAGTCGTCCTTCATTTGGACGAGGAAGCAGGAGGACATCTGGGGATAGGGGGTGC 4406 Query 245403 ACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACG 245462 | |||||||| ||||| |||| || || ||||| | || | || ||| | Sbjct 4407 CAGCATTGAACAGGGTGGGAGTGGCATGAGTGAAGTATCTCTGTGACAAGAGGTGGTAGG 4466 Query 245463 TCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGG-CGCACCTCATGAGGGTG 245521 | || ||| || |||| |||||||||||| |||| | || | ||| | | | Sbjct 4467 TGCCGATGGCAGCCTCAATGTCGTCGCCGTGGATACCAAGGGACACA-CGCATCAAGAGG 4525 Query 245522 TGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTGA------GCATGTAGGAGCGCTCG 245575 || ||||| ||||||| |||| || |||| ||| |||||| ||||| Sbjct 4526 TGTTGGGGACGCTCGATG---ATCTCG---CCGTTGATGCGGTGCAAGTAGGAACGCTCC 4579 Query 245576 AGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 | |||||||| |||||| | ||| |||||||| Sbjct 4580 AATGTCTTGAAGCCAAAGAAGTCGTACTCAAAGTCG 4615 >seq915 Length=13476 Score = 136 bits (150), Expect = 7e-27 Identities = 357/538 (66%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671 || || ||||| ||||| || || || | ||||||||||| || ||||| | | ||| Sbjct 48 TTTAATGCCATCGAGACCATTCCATGTGTAAAGAAGAAGGCTGAGTGGGCTATGAGATGG 107 Query 42672 ATCGAGAGTCCCGACGCAACGT---TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 || | || || | | || | | ||| | |||| |||||| | || || ||| Sbjct 108 AT------TACCAACTCCAAGTCATTTGCTGAGCGTTTGGTCGCCTTTGCAGCTGTAGAG 161 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 || ||||| ||| || |||| ||||||||| ||||||||| || | | |||| Sbjct 162 GGTATCTTTTTCAGTGGTAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGTGGCTTGATG 221 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 |||||| | || ||||| ||||| |||||||| | |||||||| || || | |||||| Sbjct 222 CCCGGATTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTTCACTGTGACTTT 281 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG--GAGCGGGTCCGGG 42906 ||||| || ||| ||| | || | || | ||||| | | || | Sbjct 282 GCCTG---TTTGCTCTACAGCAAGCT-TGTCA-ACCGTCTCGATGCCAACACTCTCGAGT 336 Query 42907 CCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT 42966 ||||||| || || || ||| ||||||||||| |||| || || || || || Sbjct 337 CCATCATTCGCGATGCTGTAGAGTGTGAGAAGGAGTTTATCACCCAATCACTCCCTGTCG 396 Query 42967 CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATC 43026 || | ||||||||| | ||||| |||||||| ||| ||||| | || Sbjct 397 ATCTCATTGGCATGAACAGTCGCTCCATGTCACAGTACATCGAGTTTTGTGCCGATCGTC 456 Query 43027 TCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 |||| |||| | || || |||||||| | | ||| ||||||| || Sbjct 457 TCCTCCTTGCC--CTCGGATACAAGAAGATCTACAACTCTACCAACCCATTCGACTGGAT 514 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||| |||||| | |||||||||||||||||||||| || ||| |||| ||| Sbjct 515 GGAGATGATCTCGCTCATTCGCAAGACCAACTTTTTCGAGAACCGTGTCTCCGATTAC 572 >seq2491 Length=10632 Score = 105 bits (116), Expect = 1e-17 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 ||||| || || || || || ||||||||| || ||||| ||||| || | ||| Sbjct 4145 ATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGCAGTGAACTTC 4204 Query 42480 ATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||| || || ||| ||| || || || || || || ||||||||||| || | Sbjct 4205 ATGAGCGAAGTACAG--CTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGG 4262 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 | ||| | |||||||| || || ||| || | || || || ||||| | | Sbjct 4263 AAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAG 4322 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | || |||||||| | ||| | |||||| | || || | ||||| || || || | Sbjct 4323 AAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAAT 4382 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | |||||| ||| | || || || | ||| | |||| || || Sbjct 4383 GGGCATTGCGCTGGATTGAG------GGCGGAAATTTTGCCGAACGTTTGGTGGCTTTCG 4436 Query 42718 CCGCCGTCGAGGGCATCTTCTTC-TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||| || || ||||| |||||| |||| | |||| || ||||||||| | || | Sbjct 4437 CCGCAGTGGAAGGCATTTTCTTCAGCGGGAG-CTTCTGTTCGATCTTCTGGTTGAAAAAA 4495 Query 42777 A-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || || ||||| || || | || ||| || |||||| | Sbjct 4496 AGAGGCCT-GATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGAT 4554 Query 42836 GCATAGGGACTTTGCCTGCCTCCT 42859 |||| | || ||||||||||| || Sbjct 4555 GCATTGTGAATTTGCCTGCCTGCT 4578 >seq2141 Length=1138 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| | |||| ||||| || ||| ||| || || |||||||||||| |||||||||| Sbjct 217 AAACGTCTTGGCTTTCTTTGCTGCCAGTGATGGTATCGTCAATGAGAACTTGGCCACCAG 158 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||||| |||||| || | ||| || | || ||||| || ||||| || ||||| Sbjct 157 ATTCATGTCAGAGGTCCAAATCCCTGAAGCTAGATGTTTCTATGGTTTCCAAATTGCCAT 98 Query 42536 AGAGAACGTGCACTCTGAG 42554 || || | || || ||| Sbjct 97 TGAAAATATTCATTCAGAG 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944181235660320