Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq9435 224 2e-54 seq12163 174 4e-39 seq3006 136 9e-28 seq3418 134 3e-27 seq1269 132 1e-26 seq2422 127 5e-25 seq7034 118 2e-22 >seq9435 Length=520 Score = 224 bits (248), Expect = 2e-54 Identities = 309/430 (72%), Gaps = 3/430 (1%) Strand=Plus/Minus Query 728 CGATGTTTTCGGCCACGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 787 ||||||| ||| ||| | ||| | |||| ||||||||||||||||| ||||||| |||| Sbjct 491 CGATGTTCTCGACCAGGGCGCCACGGCCGTAGTCTTCGACCACGTAGTCGTCGTTGGACG 432 Query 788 ATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTGCGCCGGCGCGCGC 847 | ||| ||||| | | ||||| | |||| || | || || ||||| || Sbjct 431 ACTCGAAGTTCGCCACGCGGTTCTTCTGCGGCTGCTCGATGAGGTAACGGCGGCGGCCGT 372 Query 848 CTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGGGA 907 | ||| |||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct 371 CGATCTGCCAGTAGATCGACAGATTGTCCAGCGAGGTGACCATCAGGGCGTTGGCCGGGA 312 Query 908 AGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGG 967 ||| |||||| ||| | | |||| ||||||||||| || || | |||||| | Sbjct 311 CGAAAGGCACGATCACCGGCTGCAGGCCACCGATGCGCTTAGTGCCCAGCACCAGATCCG 252 Query 968 CCGCGAGCCGCTCGGTCGGCGCCTGCGTCGCGTTGACGATCGGGAAATACTTGTCGTGCA 1027 | || ||| |||||||||||||| | | ||||| ||| ||||| ||||||||||||| Sbjct 251 CGGCCAGCTGCTCGGTCGGCGCCAGGTCCTTGTTGATGATGGGGAAGTACTTGTCGTGCA 192 Query 1028 GCAGCTCGCGGCCGCAGATCGCGACGAGGCCCGTGTCTTCCTGGAACCACGGGTCGATCA 1087 ||| | |||||| ||| | || | ||||| || | |||| |||||| ||||||| Sbjct 191 CCAGGTTGCGGCCCAGGATGACCACCAAGCCCGGATCCTGCTGGTGCCACGGCTCGATCA 132 Query 1088 TCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGCCGA 1147 | ||||| | |||||| || |||||||| ||||| |||| || | |||| | || Sbjct 131 GGGTGGACACCACATCCATAACCAGCGCGTCCAGGTTGGCGTAGTC-CGCGCC--GGCGC 75 Query 1148 CGAGCACCTT 1157 || |||||| Sbjct 74 CGCCCACCTT 65 >seq12163 Length=619 Score = 174 bits (192), Expect = 4e-39 Identities = 366/538 (68%), Gaps = 30/538 (6%) Strand=Plus/Minus Query 3446 TATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCCGAAG--TTCCGCGAGTTGA 3503 || ||||| || ||||| |||||||||| ||| ||| || | | ||| | || ||| Sbjct 613 TACCACGGGAATTTCTACTTCGACGAATTCTTCTGGA--CCTACGGCTTCAACCAGCTGA 556 Query 3504 ACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCACGC 3563 ||||||| || |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 555 ACAAGGTCGCCAGCGGCATGGCGATGCACAAGAAATGGCGCAAGACCTACTTCAGCACGC 496 Query 3564 CGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCC 3623 | || | | ||||||| || | || ||||||| |||| || | || | || | Sbjct 495 CTTCCACCATGGCGCACGAAGCCTACGATTTCTGGACAGGCGAGCGCTTCAA-CAAGGGC 437 Query 3624 GCGCCG-CGGGCGAGC--GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCA 3680 |||| | | ||| | ||| |||||| ||||||| ||| | | ||| Sbjct 436 AAGCCGACCTCCCAGCAGGTATC--GATCGATGTCAGCCACGGCCGGCTGGGCAGTGGCC 379 Query 3681 TGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCG 3740 ||||||||||| |||||||||||||| || |||||||||||| | | | Sbjct 378 GACGCTGCGAGGACGCTATCTGGCGGCAGATCGTCACAGTGCTCGACGCGGCCGACCGAG 319 Query 3741 GCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCGA 3800 | ||| | |||||||| | | ||||||||||||||||||| | Sbjct 318 GGTGCGATCTGTTCGA----------------TGTGGNNACAGCGCCGAGGAATTCGCCA 275 Query 3801 ACCTGCTGATGTGCCACTTCATCGACGA-TTCGCTGTCGGTGTTCAAGCTGTCGGACCTG 3859 |||||||||||||| | ||| | ||||| ||| | |||||| |||| || ||| Sbjct 274 ACCTGCTGATGTGCGAGTTCGTGGACGACAGCGCCAGC-GTGTTCCCGCTGACGATGCTG 216 Query 3860 CAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTGC-T 3918 || | ||| ||| ||| |||| ||| ||||| | ||| || ||| || | | | Sbjct 215 CAGCCGTGCCAGGTGGACAGCTGGGTGGAGTGGGCCGGCGA-GTTCAGCCCCTTCGCCAT 157 Query 3919 GCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGAC 3976 ||| || | || | |||| ||||||| | || ||||| ||||| ||||||||| Sbjct 156 GCGCCCATATGGCGACCGCGCGGTGTGGATTGGGTACGACCCGGCCGAGACGGGCGAC 99 >seq3006 Length=629 Score = 136 bits (150), Expect = 9e-28 Identities = 339/517 (66%), Gaps = 18/517 (3%) Strand=Plus/Minus Query 23330 GCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTC 23389 ||| | |||||||||||||| |||||||||||||||||||| ||||| ||| ||||| Sbjct 526 GCGGGTCGGGAAATCGGCGAAATAGCGGTCGGTGATGCGCTGGTTCAGCAGCAGGTTTTC 467 Query 23390 GAGAGGCGGAACCGGCGTGTAGTCATAATCGATGTACGCCTTGC-CGGACGCGAGA---A 23445 || ||||| ||||| |||||||| | |||||| ||| || || || | Sbjct 466 CAGCGGCGGCACCGGGGTGTAGTCGAAGTCGATG---GCCAGGCGACCACTGGACAGCTG 410 Query 23446 TGTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTA---GCCGT 23502 || ||| | ||| | || ||| ||| || | | |||| |||||| | ||| Sbjct 409 CGTGGGCAG-GTTGGCGCCCTCGTCGTACCAGGCCGTGGCCCCGAGCAGGTATCCGGCGT 351 Query 23503 TCGCGACCTGCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 23562 || ||| ||| || | ||| | ||||| | Sbjct 350 TC---ACCAGCTCGCG----CTAANNNNNNNNNNNNNNNNNNNNNNNCGCACCAGCGAGG 298 Query 23563 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCT 23622 | | |||||| ||||||| | || |||||| |||||||| | ||||| | || Sbjct 297 GGTGCAGCGGCTTGTCGACGTAGACCAACTGCGCCTCGGCGATGGTGTCGGCCAGGATCT 238 Query 23623 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGC 23682 | || ||||| ||| || ||||||| || ||| ||| || || ||| |||||| | Sbjct 237 GCGCCGTGCGGGTGGAGGTCTCGAAGGCAAACAGCGGCTCATCGCTGCAGGTGCGCGATC 178 Query 23683 CCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGC 23742 |||||||| | | |||||| ||| | ||||| || | ||| | || || || Sbjct 177 CCCAGAACTTGTACCCGTTGGAGTTGATCAGCGTGGTGATATCGGCGGCATTGAGCATGC 118 Query 23743 CCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGC 23802 | || ||||||||||| ||||||| ||||| ||||| ||||||||||| ||||| Sbjct 117 CGGCGTCGGTCGCCGGATCCTGCAGGTCCCAATGGACGTCCCGGCTGATGCCGGTCACGC 58 Query 23803 CGTTCACGACGACATTCGAAATCGTCTTGTGCCAGCC 23839 || ||| | || || || | || ||| |||||||| Sbjct 57 CGGCTACGGCCACGTTGGACAGCGACTTATGCCAGCC 21 >seq3418 Length=506 Score = 134 bits (148), Expect = 3e-27 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 5229 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5288 ||| ||||| ||||| | ||| |||| || ||| |||||| || || ||||| ||||| Sbjct 359 CGGCAAGAAAGACGGTCTGCAGATCATCCCGGTGAGCGAGGTGGCGGCCAAGGATGAGTT 418 Query 5289 CTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGCA 5348 | |||||||||| ||||||||||||||| |||| || |||| |||||||||||||| Sbjct 419 CGCCAACATCAAGGGCGTGACGCGCGACGACATGCTGGCGGCGCTGCGCGTGCCGCCGCA 478 Query 5349 GTTGCTCGGCATCGTGCCG 5367 | |||| |||||||||||| Sbjct 479 GCTGCTTGGCATCGTGCCG 497 Score = 105 bits (116), Expect = 2e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 4999 CAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAA 5058 |||||||| || ||||||||||||| || | |||| | || ||| ||||| Sbjct 129 CAGGAGGTGTACGGCCTGCCCGAGTGGATGCCGGCCGTGCAGGCCGCGCTGCTCAACGAG 188 Query 5059 TCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTG 5118 ||| | |||||||||||||||||||| ||| | |||||| ||||||||||||||||| Sbjct 189 TCGGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCTCGCACGCCGGCTTCATCCTC 248 Query 5119 TACATGACCGA 5129 ||| ||||||| Sbjct 249 TACCTGACCGA 259 >seq1269 Length=1066 Score = 132 bits (146), Expect = 1e-26 Identities = 271/397 (68%), Gaps = 17/397 (4%) Strand=Plus/Minus Query 2157 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCAACGAGATACGCCTCGCCGAT 2216 ||| |||| ||| ||||| || ||| | | || || || || |||| |||| | Sbjct 927 GGTTCCGATGCTGGCCGGCGAATCCGTCACGCCCAGGCCGTACAGGTAGGCCTTGCCGCT 868 Query 2217 GTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGCTTCTG---GCGCTTCTTCGA 2273 |||||| || || ||| |||||||| ||||||| |||||| |||| || Sbjct 867 GTCGGCAAATTCCGGGGCAATCTCGATGCTGGTGAAGACCTTCTGCTTGCGCACGTTGAC 808 Query 2274 CAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCATCTTCCCTTTCAG 2333 || |||| || || ||||||| |||| ||| || ||||||||||||| ||| | Sbjct 807 CATGTCGACCAGGTCAGCGGTCGGGTCGACCTGGGCGAACAGCGCCATCTT--CTTCTTG 750 Query 2334 CGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCGCCATACGCGCCGAACGG 2393 | || || ||||| || | ||||| | ||||| ||||||||| || |||| |||||| Sbjct 749 CCGG-CGATTTCGACTTCTTCGGCCTTGACCGCGACCACGTCGCCGTAGGCGCGGAACGG 691 Query 2394 GTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCTCGACGTTCACGCGTGCGCCGTA 2453 | ||| || || |||| | || | |||||| | | || |||||||| Sbjct 690 GCTGTCCG------GCAGCGCGCTGC---GGTAGTGCTCCATCCAGATCCGGGCGCCGTA 640 Query 2454 CAGCTTCGGGTCGTAGTGCTTC-GCCATCTGCGTGAGCCATTCACGCTTGATCTCGCGAC 2512 | || |||||||||| | ||| ||||| | | || | | |||| |||| |||| | Sbjct 639 GACCTCCGGGTCGTAG-GTTTCAGCCATTTCCACGATCTGCTGGCGCTCGATCACGCGGC 581 Query 2513 CGTCGACGGTCGCGCCTTCCACTGCGACGCGGAAGAA 2549 | ||| ||| |||||||| || || || |||||||| Sbjct 580 CATCGGTGGTGGCGCCTTCGACAGCCACACGGAAGAA 544 >seq2422 Length=594 Score = 127 bits (140), Expect = 5e-25 Identities = 188/259 (73%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 4159 CCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAA 4218 |||||| || ||| |||||||||||| | | | | |||||||||||||||||| Sbjct 591 CCAGCTGGTCCGCCAGTTCTTCCCGGGGTTGACCACCTTCAGCTACTCGCCCGAGGTGAA 532 Query 4219 AACCCGCCTCGTGCTCAAGGGCCAGTCC--GTCGTCCGGAACGGCCGCCTGCAATTCGAC 4276 || || || |||||||||| | || ||| || ||||| || ||| ||| ||| Sbjct 531 GACGCGGCTGGTGCTCAAGG--CGTTCGATGTCATCAAGAACGAGCGTCTGGAATATGAC 474 Query 4277 GCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGC 4336 || ||||||||||| || | | || | | || ||| | |||| | ||||| ||| Sbjct 473 GCCGGCTGGACCGACATGACCCAGTCGCTGCTTGCCATCCAGAAGACCAGCACGGCCAGC 414 Query 4337 GGCCGCCAGGCGACCTACACCGCCGGCCGTACCGAGGA-AACCGGCCACGCCGATCTGGC 4395 ||||| ||| | |||||||| || || || || | | |||||||||||||||||||| Sbjct 413 GGCCGACAGACCACCTACACGGCGGGGCG-CTCGCGCACGACCGGCCACGCCGATCTGGC 355 Query 4396 GTGGGC-CTGCCTGCACGC 4413 |||||| ||| ||||| || Sbjct 354 GTGGGCGCTG-CTGCATGC 337 >seq7034 Length=996 Score = 118 bits (130), Expect = 2e-22 Identities = 463/702 (66%), Gaps = 39/702 (6%) Strand=Plus/Plus Query 17897 CGTCGATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTTCCGGGAACAGTTCGGCGC 17956 |||| ||||||||||||||||| | |||||||| | | ||||||| | | ||||||| Sbjct 15 CGTCAATTTCCGGTTTGAAGCCGGTGACGGTCACCGTCTGTTCCGGGTAGATATCGGCGC 74 Query 17957 GGCCGCGCGCGAGCGTGTAGCTCATCGTCGCCTGGCTGCGCTGCATCCGCTTGAACTCCG 18016 |||| |||||| |||||||| ||| || || | || || ||||| || | Sbjct 75 GGCCCAATGCGAGCCGGTAGCTCAGTTGCGCGGTGCCCCGATCCAGTCGTTTGAATTCGG 134 Query 18017 CTTGCGCG-GCAGCGCGCGCTTCCGCCTCCGTCGCGTAGTCTTCCGGCAGCACCTTCACG 18075 | | |||| || | ||||||||| || |||| |||||| || | ||| |||| || Sbjct 135 CCTCCGCGTGCTG-ACGCGCTTCCTCCGCCGTGGCGTAGGTGGCCTGTAGCTTCTTCTCG 193 Query 18076 TTCT-TGTTGTTCTCACCGCCGACGATGAC-CGACTTCCGCT-TCGCGCGGCCGGTCGAA 18132 |||| || || | |||| | ||| || |||| | ||| | |||| ||| | || Sbjct 194 TTCTCTGGCGTGCCCACCAGC-ACGCCCACGCGACGT--GCTGCCTTGCGGTCGGCCCAA 250 Query 18133 TGGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGACACGTGGTAACGATGACTG 18192 | | |||||||| | | ||| |||||||| |||| ||| ||| || || ||| Sbjct 251 TAG------GCGCGCACACCGGTGTATTTCTCGCGGTCGGCAACGCTGTAGCGGTG-CTG 303 Query 18193 -TCGCCGCTCGCGCGCGTCAGTTCGAGCACGTCG---AGCTGCTTTCCGCTCGCCGTCTG 18248 ||||| ||| ||||| | || ||||| || ||| ||| ||||| || ||| Sbjct 304 ATCGCCCGACGCACGCGTGATTT---GCACGCCGGGCAGCGGCTGGCCGCTGGCGGTCGT 360 Query 18249 GCCGGTGCCGATCGGC---ATGAACAGCAAGCGTAGATCCTTCACGTTCATGACGGCGTC 18305 ||||| || ||| ||| | || |||| || | |||| || | | | || Sbjct 361 GCCGGCGCAGATGGGCGCAAAGATCAGC--GCCCCG-GCCTTGAC---CGTTGCCTNNTC 414 Query 18306 ATAGCGCTTCGCCAGGCGCGTCAGAAACGACATGTCCGATTCGTGCGTCTGGTCGATGTG 18365 |||| | |||| || || || | || || ||||| | |||||||| ||| Sbjct 415 GAAGCGACGCCCCAGCCGGGTGAGCAGGTTGATATCGCTTTCGTTGGCCTGGTCGAGGTG 474 Query 18366 CGCGATCAGGACCTTCGCGAGCGCGTCGCCGA-CGATCGGCGCCAGCGAGTAGCGC-CCG 18423 | || || | || || | || ||| | | |||| ||| || | || | || Sbjct 475 GGGGACTGCGATGCTGGCCAGATCCGCGGCGATGGCTGGGCG-CAGTGAAT-GCTCGCCC 532 Query 18424 GCGATCGCGTGGACGATCGAGCCGATCGT-CTGTCGATGCCAGCTCTTCTCGCGGC-GCT 18481 ||||| || || || ||| | || ||||| |||||||| ||||| | ||| Sbjct 533 GCGATGGCACCGAGAATGTCGCCCAGGGTGGTGTCG-TGCCAGCTGCGTTCGCGCCGGCT 591 Query 18482 CCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGACGATGTCCGGCGCGC 18541 | | | | | | || | |||| |||||||| ||||| |||| ||||| ||||||| Sbjct 592 GC-GGACGGCACCGGTGAGGTCGGCAGAGCGCGCACGGATCGTGAGAATGTCAGGCGCGC 650 Query 18542 CGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGA 18583 |||||||||| || |||| || || || ||||||| |||| Sbjct 651 CGCTGTGCTCCACGTCGTCAACGACAAACGTGCCCTTCTCGA 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114231444453252