Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq9435 223 8e-54 seq12163 185 2e-42 seq3006 136 9e-28 seq1269 136 9e-28 seq3418 129 1e-25 seq2422 125 2e-24 seq7034 114 3e-21 >seq9435 Length=520 Score = 223 bits (246), Expect = 8e-54 Identities = 293/406 (72%), Gaps = 0/406 (0%) Strand=Plus/Minus Query 783 CGATGTTTTCGGCCACGCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 842 ||||||| ||| ||| | ||| | ||| ||||||||||||||||| ||||||| |||| Sbjct 491 CGATGTTCTCGACCAGGGCGCCACGGCCGTAGTCTTCGACCACGTAGTCGTCGTTGGACG 432 Query 843 ATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTGCGCCGGCGCGCGC 902 | ||| ||||| | | ||||| | |||| || | || || ||||| || Sbjct 431 ACTCGAAGTTCGCCACGCGGTTCTTCTGCGGCTGCTCGATGAGGTAACGGCGGCGGCCGT 372 Query 903 CTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGGGA 962 | ||| |||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct 371 CGATCTGCCAGTAGATCGACAGATTGTCCAGCGAGGTGACCATCAGGGCGTTGGCCGGGA 312 Query 963 AGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGG 1022 ||| |||||| ||| | | |||| ||||||||||| || || | |||||| | Sbjct 311 CGAAAGGCACGATCACCGGCTGCAGGCCACCGATGCGCTTAGTGCCCAGCACCAGATCCG 252 Query 1023 CCGCGAGCCGCTCGGTCGGCGCCTGCGTCGCGTTGACGATCGGGAAATACTTGTCGTGCA 1082 | || ||| |||||||||||||| | | ||||| ||| ||||| ||||||||||||| Sbjct 251 CGGCCAGCTGCTCGGTCGGCGCCAGGTCCTTGTTGATGATGGGGAAGTACTTGTCGTGCA 192 Query 1083 GCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGGAACCACGGGTCGATCA 1142 ||| | |||||| ||| || || | ||||| || | |||| |||||| ||||||| Sbjct 191 CCAGGTTGCGGCCCAGGATGACCACCAAGCCCGGATCCTGCTGGTGCCACGGCTCGATCA 132 Query 1143 TCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATC 1188 | ||||| | |||||| || |||||||| ||||| |||| || Sbjct 131 GGGTGGACACCACATCCATAACCAGCGCGTCCAGGTTGGCGTAGTC 86 >seq12163 Length=619 Score = 185 bits (204), Expect = 2e-42 Identities = 323/465 (69%), Gaps = 28/465 (6%) Strand=Plus/Minus Query 3501 TACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCGAAG--TTCCGCGAGCTGA 3558 |||||||| || |||||||||||||||| ||| ||| || | | ||| | |||||| Sbjct 613 TACCACGGGAATTTCTACTTCGACGAATTCTTCTGGA--CCTACGGCTTCAACCAGCTGA 556 Query 3559 ACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGC 3618 ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 555 ACAAGGTCGCCAGCGGCATGGCGATGCACAAGAAATGGCGCAAGACCTACTTCAGCACGC 496 Query 3619 CGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCC 3678 | |||| | | ||||||| || |||| ||||||| |||| || | || | || | Sbjct 495 CTTCCACCATGGCGCACGAAGCCTACGATTTCTGGACAGGCGAGCGCTTCAA-CAAGGGC 437 Query 3679 GCGCCG-CGGGCGAGC--GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCA 3735 |||| | | ||| | ||| |||||| ||||||| ||| | | ||| Sbjct 436 AAGCCGACCTCCCAGCAGGTATC--GATCGATGTCAGCCACGGCCGGCTGGGCAGTGGCC 379 Query 3736 TGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCG 3795 ||||||||||| |||||||||||||| || |||||||| ||| | | | Sbjct 378 GACGCTGCGAGGACGCTATCTGGCGGCAGATCGTCACAGTGCTCGACGCGGCCGACCGAG 319 Query 3796 GCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGA 3855 | ||||| |||||||| | | ||||||||||||||||||| | Sbjct 318 GGTGCGATCTGTTCGA----------------TGTGGNNACAGCGCCGAGGAATTCGCCA 275 Query 3856 ATCTGCTCATGTGCCAGTTCATCGACGA-TTCGCTGTCGGTGTTCAAGCTGTCGGACCTG 3914 | ||||| |||||| ||||| | ||||| ||| | |||||| |||| || ||| Sbjct 274 ACCTGCTGATGTGCGAGTTCGTGGACGACAGCGCCAGC-GTGTTCCCGCTGACGATGCTG 216 Query 3915 CAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTC 3959 || | ||| ||| ||| |||| || ||||| | ||| ||| Sbjct 215 CAGCCGTGCCAGGTGGACAGCTGGGTGGAGTGGGCCGGCGAGTTC 171 >seq3006 Length=629 Score = 136 bits (150), Expect = 9e-28 Identities = 339/517 (66%), Gaps = 18/517 (3%) Strand=Plus/Minus Query 24334 GCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTC 24393 ||| | |||||||||||||| |||||||||||||||||||| ||||| ||| ||||| Sbjct 526 GCGGGTCGGGAAATCGGCGAAATAGCGGTCGGTGATGCGCTGGTTCAGCAGCAGGTTTTC 467 Query 24394 GAGAGGCGGAACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGG-ACGCGAGAAT-- 24450 || ||||| ||||| ||||||||| | |||||| ||| || || || | Sbjct 466 CAGCGGCGGCACCGGGGTGTAGTCGAAGTCGATG---GCCAGGCGACCACTGGACAGCTG 410 Query 24451 -GTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG 24509 || ||| | ||| | || ||| ||| || | | |||| |||||| ||| | Sbjct 409 CGTGGGCAG-GTTGGCGCCCTCGTCGTACCAGGCCGTGGCCCCGAGCAGGTATCCG---G 354 Query 24510 CG---ACCTGCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 24566 || ||| ||| || | ||| | ||||| | Sbjct 353 CGTTCACCAGCTCGCGCTAANNNNNNNNNNNNNNNNNNNNNNN----CGCACCAGCGAGG 298 Query 24567 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCT 24626 | | |||||| ||||||| | || |||||| |||||||| | ||| | | || Sbjct 297 GGTGCAGCGGCTTGTCGACGTAGACCAACTGCGCCTCGGCGATGGTGTCGGCCAGGATCT 238 Query 24627 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGC 24686 | || ||||| ||| || ||||||| || ||| ||| || || ||| |||||| | Sbjct 237 GCGCCGTGCGGGTGGAGGTCTCGAAGGCAAACAGCGGCTCATCGCTGCAGGTGCGCGATC 178 Query 24687 CCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGC 24746 |||||||| | | |||||| ||| | ||||| || | ||| | || || || Sbjct 177 CCCAGAACTTGTACCCGTTGGAGTTGATCAGCGTGGTGATATCGGCGGCATTGAGCATGC 118 Query 24747 CCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGC 24806 | || ||||||||||| ||||||| ||||| ||||| ||||||||||| ||||| Sbjct 117 CGGCGTCGGTCGCCGGATCCTGCAGGTCCCAATGGACGTCCCGGCTGATGCCGGTCACGC 58 Query 24807 CGTTCACGACGACATTCGAAATCGTCTTGTGCCAGCC 24843 || ||| | || || || | || ||| |||||||| Sbjct 57 CGGCTACGGCCACGTTGGACAGCGACTTATGCCAGCC 21 >seq1269 Length=1066 Score = 136 bits (150), Expect = 9e-28 Identities = 272/397 (69%), Gaps = 17/397 (4%) Strand=Plus/Minus Query 2212 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCGACGAGATACGCCTCGCCGAT 2271 ||| |||| ||| ||||| || ||| | | || ||| || || |||| |||| | Sbjct 927 GGTTCCGATGCTGGCCGGCGAATCCGTCACGCCCAGGCCGTACAGGTAGGCCTTGCCGCT 868 Query 2272 GTCGGCGAAGTCGGGGTTGATTTCGATCGACGTGAAGAGCTTCTG---GCGCTTCTTCGA 2328 |||||| || || ||| || ||||| ||||||| |||||| |||| || Sbjct 867 GTCGGCAAATTCCGGGGCAATCTCGATGCTGGTGAAGACCTTCTGCTTGCGCACGTTGAC 808 Query 2329 CAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCATCTTCCCTTTCAG 2388 || |||| || || ||||||| |||| ||| || ||||||||||||| ||| | Sbjct 807 CATGTCGACCAGGTCAGCGGTCGGGTCGACCTGGGCGAACAGCGCCATCTT--CTTCTTG 750 Query 2389 CGGGCCGTCTTCGATTTCGGCCGCCTTCAGCGCGATCACGTCGCCATACGCGCCGAACGG 2448 | || || ||||| ||| | ||||| | ||||| ||||||||| || |||| |||||| Sbjct 749 CCGG-CGATTTCGACTTCTTCGGCCTTGACCGCGACCACGTCGCCGTAGGCGCGGAACGG 691 Query 2449 GTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCTCGACGTTCACGCGTGCGCCGTA 2508 | ||| || || |||| | || | |||||| | | || |||||||| Sbjct 690 GCTGTCCG------GCAGCGCGCTGC---GGTAGTGCTCCATCCAGATCCGGGCGCCGTA 640 Query 2509 CAGCTTCGGGTCGTAGTGCTTC-GCCATCTGCGTGAGCCATTCACGCTTGATCTCGCGAC 2567 | || |||||||||| | ||| ||||| | | || | | |||| |||| |||| | Sbjct 639 GACCTCCGGGTCGTAG-GTTTCAGCCATTTCCACGATCTGCTGGCGCTCGATCACGCGGC 581 Query 2568 CGTCGACGGTCGCGCCTTCCACTGCGACGCGGAAGAA 2604 | ||| ||| |||||||| || || || |||||||| Sbjct 580 CATCGGTGGTGGCGCCTTCGACAGCCACACGGAAGAA 544 >seq3418 Length=506 Score = 129 bits (142), Expect = 1e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 5284 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5343 ||| ||||| ||||| | ||| |||| || ||| |||||| || || ||||| ||||| Sbjct 359 CGGCAAGAAAGACGGTCTGCAGATCATCCCGGTGAGCGAGGTGGCGGCCAAGGATGAGTT 418 Query 5344 CTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGCA 5403 | |||||||||| |||||||||||| ||| |||| || || | |||||||||||||| Sbjct 419 CGCCAACATCAAGGGCGTGACGCGCGACGACATGCTGGCGGCGCTGCGCGTGCCGCCGCA 478 Query 5404 GTTGCTCGGCATCGTGCCG 5422 | |||| |||||||||||| Sbjct 479 GCTGCTTGGCATCGTGCCG 497 Score = 105 bits (116), Expect = 2e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 5054 CAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAA 5113 |||||||| || ||||||||||||| || | |||| | || ||| ||||| Sbjct 129 CAGGAGGTGTACGGCCTGCCCGAGTGGATGCCGGCCGTGCAGGCCGCGCTGCTCAACGAG 188 Query 5114 TCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTG 5173 ||| | |||||||||||||||||||| ||| | |||||| ||||||||||||||||| Sbjct 189 TCGGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCTCGCACGCCGGCTTCATCCTC 248 Query 5174 TACATGACCGA 5184 ||| ||||||| Sbjct 249 TACCTGACCGA 259 >seq2422 Length=594 Score = 125 bits (138), Expect = 2e-24 Identities = 183/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 4214 CCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAA 4273 |||||| || ||| |||||||||||| | | | | |||||||||||||||||| Sbjct 591 CCAGCTGGTCCGCCAGTTCTTCCCGGGGTTGACCACCTTCAGCTACTCGCCCGAGGTGAA 532 Query 4274 AACCCGCCTCGTGCTCAAGGGCCAGTCC--GTCGTCCGGAACGGCCGCCTGCAATTCGAC 4331 || || || |||||||||| | || ||| || ||||| || ||| ||| ||| Sbjct 531 GACGCGGCTGGTGCTCAAGG--CGTTCGATGTCATCAAGAACGAGCGTCTGGAATATGAC 474 Query 4332 GCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGC 4391 || ||||||||||| || | | || | | || ||| | |||| | ||||| ||| Sbjct 473 GCCGGCTGGACCGACATGACCCAGTCGCTGCTTGCCATCCAGAAGACCAGCACGGCCAGC 414 Query 4392 GGCCGTCAGGCGACCTACACCGCTGGCCGTACCGACGAGACGGGCCACGCCGACCTGGCG 4451 ||||| ||| | |||||||| || || || | | ||| ||||||||||| |||||| Sbjct 413 GGCCGACAGACCACCTACACGGCGGGGCGCTCGCGCACGACCGGCCACGCCGATCTGGCG 354 Query 4452 TGGGCGTGCCTGCACGC 4468 |||||| ||||| || Sbjct 353 TGGGCGCTGCTGCATGC 337 >seq7034 Length=996 Score = 114 bits (126), Expect = 3e-21 Identities = 460/701 (66%), Gaps = 37/701 (5%) Strand=Plus/Plus Query 18901 CGTCGATTTCCGGTTTGAAGCCTGATACGGTCACGGGCATCTCCGGGAACAGTTCGGCGC 18960 |||| ||||||||||||||||| | |||||||| | | |||||| | | ||||||| Sbjct 15 CGTCAATTTCCGGTTTGAAGCCGGTGACGGTCACCGTCTGTTCCGGGTAGATATCGGCGC 74 Query 18961 GGCCGCGCGCGAGCGTGTAGCTCATCGTCGCCTGGCTGCGCTGCATCCGCTTGAACTCCG 19020 |||| |||||| |||||||| ||| || || | || || ||||| || | Sbjct 75 GGCCCAATGCGAGCCGGTAGCTCAGTTGCGCGGTGCCCCGATCCAGTCGTTTGAATTCGG 134 Query 19021 CTTGCGCGGCCGCGCGCGCTTCCGCCTCCGTTGCGTAATCTTCCGGCAGCACCTTCACGT 19080 | | |||| | ||||||||| || |||| ||||| || | ||| |||| ||| Sbjct 135 CCTCCGCGTGCTGACGCGCTTCCTCCGCCGTGGCGTAGGTGGCCTGTAGCTTCTTCTCGT 194 Query 19081 TCT-TGTTGTTCTCACCGCCGACGATGAC-CGACTTGC-GCTTCGCGCGGCCGGTCGAAT 19137 ||| || || | |||| | ||| || |||| ||| || | |||| ||| | ||| Sbjct 195 TCTCTGGCGTGCCCACCAGC-ACGCCCACGCGACGTGCTGC--CTTGCGGTCGGCCCAAT 251 Query 19138 GGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGACACGTGGTAACGATGACTG- 19196 | |||||||| | | ||| |||||||| |||| ||| ||| || || ||| Sbjct 252 AG------GCGCGCACACCGGTGTATTTCTCGCGGTCGGCAACGCTGTAGCGGTG-CTGA 304 Query 19197 TCGCCGCTCGCGCGCGTCAGTTCGAGCATGTCG---AGCTGCTTTCCGCTCGCCGTCTGG 19253 ||||| ||| ||||| | || ||| | || ||| ||| ||||| || ||| | Sbjct 305 TCGCCCGACGCACGCGTGATTT---GCACGCCGGGCAGCGGCTGGCCGCTGGCGGTCGTG 361 Query 19254 CCGGTGCCGATCGGC---ATGAACAGCAAGCGTAGATCCTTCACGTTCATGACGGCGTCG 19310 |||| || ||| ||| | || |||| || | |||| || | | | ||| Sbjct 362 CCGGCGCAGATGGGCGCAAAGATCAGC--GCCCCG-GCCTTGAC---CGTTGCCTNNTCG 415 Query 19311 TAGCGCTTCGCCAGACGCGTCAGAAACGACATGTCCGATTCGTGCGTCTGGTCGATGTGC 19370 |||| | |||| || || || | || || ||||| | |||||||| ||| Sbjct 416 AAGCGACGCCCCAGCCGGGTGAGCAGGTTGATATCGCTTTCGTTGGCCTGGTCGAGGTGG 475 Query 19371 GCGATCAGGACCTTCGCGAGCGCGTCGCCGA-CGATCGGCGCCAGCGAGTAGCGC-CCGG 19428 | || || | || || | || ||| | | |||| ||| || | || | || | Sbjct 476 GGGACTGCGATGCTGGCCAGATCCGCGGCGATGGCTGGGCG-CAGTGAAT-GCTCGCCCG 533 Query 19429 CGATCGCGTGGACGATCGAGCCGATCGT-CTGTCGATGCCAGCTCTTCTCGCGGC-GCTC 19486 |||| || || || ||| | || ||||| |||||||| ||||| | ||| Sbjct 534 CGATGGCACCGAGAATGTCGCCCAGGGTGGTGTCG-TGCCAGCTGCGTTCGCGCCGGCTG 592 Query 19487 CTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGACGATGTCCGGCGCGCC 19546 | | | | | | || | |||| |||||||| ||||| |||| ||||| |||||||| Sbjct 593 C-GGACGGCACCGGTGAGGTCGGCAGAGCGCGCACGGATCGTGAGAATGTCAGGCGCGCC 651 Query 19547 GCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGA 19587 ||||||||| || |||| || || || ||||||| |||| Sbjct 652 GCTGTGCTCCACGTCGTCAACGACAAACGTGCCCTTCTCGA 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117267761871568