Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq3418 269 7e-68 seq3006 206 7e-49 seq12163 163 7e-36 seq9435 143 7e-30 seq1269 132 1e-26 >seq3418 Length=506 Score = 269 bits (298), Expect = 7e-68 Identities = 287/373 (77%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 3094 CGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGCGGCGAGCTGGTCGTCGCGCGT 3153 ||| | |||||| | ||||||||||| ||||| |||| || ||| |||||||||||| Sbjct 497 CGGCACGATGCCAAGCAGCTGCGGCGGCACGCGCAGCGCCGCCAGCATGTCGTCGCGCGT 438 Query 3154 GACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGTAGCAACTG 3213 ||| ||||||||| |||||| ||||| || ||||||||| |||||| | | ||| Sbjct 437 CACGCCCTTGATGTTGGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTG 378 Query 3214 GATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAGGTTGCGGAAATTGCCCGGCCC 3273 | || || |||||||| ||||||| | || ||||||||| ||||| |||||||| || Sbjct 377 CAGACCGTCTTTCTTGCCGTTGGGCGAATGCACGAACAGGTTCCGGAAGTTGCCCGGACC 318 Query 3274 -CTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACGTCCTCCTGCTTCTGCGCC---G 3329 | || | | ||| | |||||||||||| | ||||| | | ||| |||| | Sbjct 317 ACGTGCCGC-CTTGAGCGCCTCGCGCAGGCCGGTTACGTCGGAC-GATTC--CGCCTGGG 262 Query 3330 CATCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGTTCTTGTAGTACCGGCGCCGGA 3389 |||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 261 AATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCGGA 202 Query 3390 ACAGCGTGGCCGATTCGTTCAACCACGTGGCGTTCAGCGCGGACAGGTATTCCGGCAGGC 3449 ||||||||||||| ||||| | | || ||| | || || | || | || ||||||| Sbjct 201 ACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAGGC 142 Query 3450 CGTACACCTCCTG 3462 ||||||||||||| Sbjct 141 CGTACACCTCCTG 129 >seq3006 Length=629 Score = 206 bits (228), Expect = 7e-49 Identities = 339/492 (69%), Gaps = 12/492 (2%) Strand=Plus/Plus Query 19519 GGCTGGCACAAGACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTCGCGCGAC 19578 |||||||| ||| |||| ||||||||||| || | |||||||||||| | || ||| Sbjct 21 GGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCAGCCGGGAC 80 Query 19579 GTGTTCTGGGACCTTCAGGACCCGGCGACCGACGCGGGCTACCTGAACGCCAACGAGGTG 19638 || |||||||| ||||| |||||||||||||| ||| || || ||| ||| | Sbjct 81 GTCCATTGGGACCTGCAGGATCCGGCGACCGACGCCGGCATGCTCAATGCCGCCGATATC 140 Query 19639 ACCACGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGTGCGGAT 19698 ||||||||| | || | |||| ||| |||||||| |||||||| ||||| | || Sbjct 141 ACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGCACCTGCAGCGATGAG 200 Query 19699 CCGCTGTTCGCCTTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCG 19758 |||||||| |||||||||| || ||||||||| |||||| | |||||||||||||| || Sbjct 201 CCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGACACCATCGCC 260 Query 19759 GAAGCACACAT-GTGGGCGAACGACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCT 19817 || || || | || || |||| ||| || ||| | || ||||| Sbjct 261 GAGGCGCAGTTGGTCTACG-TCGACAAGCCGCTGCACCCCTCGCTGGTGCG----NNNNN 315 Query 19818 GGAGGGCATCAATGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGCGC 19877 | |||| |||| | |||||||||||| || | | | Sbjct 316 NNNNNNNNNNNNNNNNNNTTAGCGCGAGCTGGTGAACGCCGGATACCTGCTCGGGGCCAC 375 Query 19878 CGCGTGGTTCGACGCGGACGCCAACAGCAAGGACACGCTGAAGGCC---GGGCAACTCGC 19934 || |||| ||||| || |||||| | | ||||| | | || || | || || Sbjct 376 GGCCTGGTACGACGAGGGCGCCAA---CCTGCCCACGCAGCTGTCCAGTGGTCGCCTGGC 432 Query 19935 CATCGACTACGACTACACGCCCGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCAT 19994 |||||||| ||||||||| || || || || ||||| ||||| | | ||||||||| Sbjct 433 CATCGACTTCGACTACACCCCGGTGCCGCCGCTGGAAAACCTGCTGCTGAACCAGCGCAT 492 Query 19995 CACCGACCGCTA 20006 |||||||||||| Sbjct 493 CACCGACCGCTA 504 >seq12163 Length=619 Score = 163 bits (180), Expect = 7e-36 Identities = 347/516 (67%), Gaps = 21/516 (4%) Strand=Plus/Plus Query 4525 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAG 4584 |||||||| || | |||||||| |||| ||| | || || ||||| || | ||| Sbjct 115 GGGTCGTACCCAATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAAC 174 Query 4585 TCTTC---CCATACCTCCCAACTGTCCACCATCCCGCGCATG-AGCATCGCGAGCGGAAA 4640 || | ||| || |||| ||||||||| | | || || ||||||| ||||| || Sbjct 175 TCGCCGGCCCACTCCACCCAGCTGTCCACC-TGGCACGGCTGCAGCATCGTCAGCGGGAA 233 Query 4641 CACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCT 4700 ||| ||| ||||||| | ||| ||||||| |||||||||||||| || |||| Sbjct 234 CACGCTGGCGCTGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCT 293 Query 4701 GTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTC 4760 || ||| || |||||||| | ||| || | | | ||| || Sbjct 294 GTNN-CCA----CA-----------TCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAG 337 Query 4761 CACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGC 4820 ||| || ||||| || ||||| ||||| ||||||| ||| || ||| | | Sbjct 338 CACTGTGACGATCTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCC 397 Query 4821 GTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCC 4880 |||||| | |||| | | ||| | | | | |||||| |||||| | |||| Sbjct 398 GTGGCTGACATCGATCGATACCTGCTGGGAGGTCGGCTTGCCCTTGTTGAAGCGCTCGCC 457 Query 4881 GGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACG 4940 | |||||| ||||| || |||| || | |||| |||||| ||||||||||| || Sbjct 458 TGTCCAGAAATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCG 517 Query 4941 CCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCAC 5000 ||| | |||||| |||||||||||| |||||||||| ||| | | ||||| Sbjct 518 CCATTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAGCCGTAGGT 577 Query 5001 CCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATA 5036 ||||||| |||| |||||||| | || ||||| || Sbjct 578 CCAGAAGAATTCGTCGAAGTAGAAATTCCCGTGGTA 613 >seq9435 Length=520 Score = 143 bits (158), Expect = 7e-30 Identities = 295/429 (69%), Gaps = 10/429 (2%) Strand=Plus/Plus Query 7397 GTCGGTGGCGCTGGCGCGGACTATGGAAACCTGGACGCCCTGGTGTACGACATCACGAAT 7456 || || ||||| ||||||||||| | ||||||||||| ||||| || | || | | Sbjct 68 GTGGGCGGCGCCGGCGCGGACTACGCCAACCTGGACGCGCTGGT-TATGG-ATGTGGTGT 125 Query 7457 CA--CCTGGTCGAGCCGTGGTACGCAG-AGGATCCGGATCTGGTCGTTGTGTGCGGTCGC 7513 | |||| ||||||||||| || ||| ||||||||| |||| || | || ||| Sbjct 126 CCACCCTGATCGAGCCGTGGCAC-CAGCAGGATCCGGGCTTGGTGGTCATCCTGGGCCGC 184 Query 7514 AACCTGCTGTCCGACAAATACTTCCCGCTGGTGAACAGGGACCGCGACCCGGTCCAGCAG 7573 |||||| || |||||| |||||||| | | |||| ||||| | ||| | ||||| Sbjct 185 AACCTGGTGCACGACAAGTACTTCCCCATCATCAACAAGGACCTGGCGCCGACCGAGCAG 244 Query 7574 ATCGCGGCCGACCTCATCATCAGCCAGAAGCGCATCGGCAACCTGCCGGCCATCCGCGTG 7633 | || || || || | | || ||||||||||| ||||| | | | |||| Sbjct 245 CTGGCCGCGGATCTGGTGCTGGGCACTAAGCGCATCGGTGGCCTGCAGCCGGTGATCGTG 304 Query 7634 CCGTACTTCCCGGCGAATGGCCTGCTGGTGACGCGCCTGGACAACCTGTCCATTTACTAC 7693 || | | ||||||| || | |||| |||| || |||||||| ||||| || |||| Sbjct 305 CCTTTCGTCCCGGCCAACGCCCTGATGGTCACCTCGCTGGACAATCTGTCGATCTACTGG 364 Query 7694 CAGGAGGGCGGGCGCCGTCGCACGATCCTGGACAACGCGAAGCGCGATCGCATCGAAAAC 7753 ||| | ||| ||||| || || | || | || || | ||| | | ||| Sbjct 365 CAGATCGACGGCCGCCGCCGTTACCTCATCGAGCAGCCGCAGAAGAACCGCGTGGCGAAC 424 Query 7754 TACGAGTCGAGCAACGACGCGTACGTGATCGAAGAC--CTGGCGTGCGCGGCCATGGCCG 7811 | ||||||| |||||||| |||||| |||||||| | | |||| || ||| ||| || Sbjct 425 TTCGAGTCGTCCAACGACGACTACGTGGTCGAAGACTACGGCCGTG-GC-GCCCTGGTCG 482 Query 7812 AAAACATCG 7820 | ||||||| Sbjct 483 AGAACATCG 491 >seq1269 Length=1066 Score = 132 bits (146), Expect = 1e-26 Identities = 317/476 (67%), Gaps = 20/476 (4%) Strand=Plus/Plus Query 5935 CCAAGTTCTACCGCGTCGCCACCGAAGGCGCAACGAGCGACGGCCGCGTGATCGACCGCG 5994 || |||||| ||| || || ||||||||| || | ||| |||||||||||||| ||| Sbjct 539 CCCAGTTCTTCCGTGTGGCTGTCGAAGGCGCCACCACCGATGGCCGCGTGATCGAGCGCC 598 Query 5995 AAACGCTGGTCGAGATGGCAACCAACTATGACCCCAAGGTCTACACCGCGCGCGTCAACC 6054 | | | || || ||||| | ||| ||||| |||||||| ||| || || Sbjct 599 AGCAGATCGTGGAAATGGCTGAAACCTACGACCCGGAGGTCTACGGCGCCCGGATCTGGA 658 Query 6055 TTGAGCACATCCGAGGCTACGACCCGACCGGCCCGTTCAAAGCCTACGGCGACGTGACAG 6114 | |||||| ||| || ||| | |||||||| ||||||||||||||| | Sbjct 659 TGGAGCACTACCGCAGCGCGCTGCCGGACAGCCCGTTCCGCGCCTACGGCGACGTGGTCG 718 Query 6115 CACTGAAGACCGAAGA----GCA--GGACGGC------AAGATGCGCCTGCTCGCGCAGA 6162 | | ||| ||||||| | | | |||| |||||| ||| |||| ||| Sbjct 719 CGGTCAAGGCCGAAGAAGTCGAAATCGCCGGCAAGAAGAAGATGGCGCTGTTCGCCCAGG 778 Query 6163 TCGATCCCACGGACGACCTGGTCGCCATGACCAAGGCTCGC---CAGAAAATCTTTGCCT 6219 |||| || || | |||||||||| |||| ||| | ||| ||||| |||| || Sbjct 779 TCGACCCGACCGCTGACCTGGTCGACATGGTCAACGTGCGCAAGCAGAAGGTCTTCACCA 838 Query 6220 CTATGGAGTTGAACCCGAGCTTCGCCGACACCGGCGAGGCCTACCTGGTCGGCCTCGCCG 6279 || ||| | |||| || ||||||| |||| ||||||||||| |||||| | || Sbjct 839 GCATCGAGATTGCCCCGGAATTTGCCGACAGCGGCAAGGCCTACCTGTACGGCCTGGGCG 898 Query 6280 TGACCGACAACCCGGCAAGCCTGGGATGCGAAGTCCTGCAGTTCAGTGCCAAG----GCC 6335 |||| || ||||| ||| | ||| | | | ||| ||| |||||| | Sbjct 899 TGACGGATTCGCCGGCCAGCATCGGAACCAACATGCTGGCCTTCTCGGCCAAGAACCCCG 958 Query 6336 AAGACCAACCCGCTCGCCGCACGCAAGCAGAACCCGGACAACCTGTTCACCGAGGC 6391 |||| || |||| || | ||||||||| |||| ||||||||| |||| || Sbjct 959 AAGA-CAGCCCGTTCAAGGACCGCAAGCAGGCGCCGGGAAACCTGTTCTCCGAAGC 1013 Score = 98.7 bits (108), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 5421 GTTGCGGTTCGCCACCTTCGGGTTCAGGTCGGTTTCGTTGCCGCTGGCCTCGTACCGGCG 5480 ||||||||| || ||| ||||||||||| | |||||||||| | ||| ||| || | Sbjct 16 GTTGCGGTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCCGCCGCCCTGGTAACGCTG 75 Query 5481 CACGCGCGCCATGCGCTCCATTTGTCGGCCAAGCAGGTCGATTTCCTTGTAGTCCCGGCC 5540 | ||| ||| ||||||| || || ||||||||||| || ||| |||| | ||| Sbjct 76 GATGCGGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGCC 135 Query 5541 TTCCTTCACCTCCTTGGCGACGAGCTGCGCCATGCGCTCTTCGATGCTGTTCGCC-ACGC 5599 ||| | |||||| || || |||| ||| | || | | | |||| || | Sbjct 136 GGTCTTACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGCG-CCGCCAACAC 194 Query 5600 GCTCCACTGCATCCGCCGCGTCCCACCCATCGCGCCGCTTCCAGCTGTGCACCGTC 5655 ||||||| | ||| || |||||| | |||||| |||||||||||| || ||| Sbjct 195 GCTCCACGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123890709243448