Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq8279 567 2e-157 seq11147 556 4e-154 seq11016 358 2e-94 seq7708 327 3e-85 seq10706 147 6e-31 seq132 136 1e-27 seq7968 86.0 2e-12 >seq8279 Length=588 Score = 567 bits (628), Expect = 2e-157 Identities = 457/570 (80%), Gaps = 0/570 (0%) Strand=Plus/Plus Query 42089 GGGCCGTCGACGGCGACCGTGGACGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCG 42148 ||||||||||| |||||||| || ||||| ||||||||||| ||||| |||||||||||| Sbjct 2 GGGCCGTCGACCGCGACCGTCGAGGGGTCGACGTCGACGATGCGCTCGCCCTGCCAGTCG 61 Query 42149 ATGACGAGACGGCCGTCGCCGGTGACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTG 42208 |||| ||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 62 ATGATGAGGCGTCCGTCACCGGTGACCTCGCCGAGCACGGAGGTCTCGACCTCCCACTTG 121 Query 42209 CCGGTGACGGCGAGGAACGCGTCGAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCC 42268 ||| ||||||| || ||||||||| | |||| |||||| |||||||| |||||| Sbjct 122 TTCACGACCTCGAGGAAGGCATCGAGCTTCTCGGGCGCGACGATCGCCATCATGCGCTCC 181 Query 42269 TGCGACTCCGACATGAGGATCTCCTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTG 42328 ||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct 182 TGCGACTCCGACATGAGGATCTCCTCGGCCGTGAGCGTGGGGTCGCGCAGCAGCACGTTG 241 Query 42329 TCGAGCGAGACGTGCATTCCGCTGTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAG 42388 ||||||||||| | ||| ||||||||||||||||| ||||||||||| || ||||| ||| Sbjct 242 TCGAGCGAGACCTTCATGCCGCTGTTGCCGTTGGCCGCGAGCTCGCTGGTCGCGCACGAG 301 Query 42389 ATGCCTGCAGCCCCGAGGTCCTGGATCGCCTCGACCAGCTCGTCGCGGTACAGCTCCAGG 42448 ||||| || || ||||||||||||||||||||||| |||||| ||||||||||||| ||| Sbjct 302 ATGCCGGCGGCACCGAGGTCCTGGATCGCCTCGACGAGCTCGCCGCGGTACAGCTCGAGG 361 Query 42449 CAGCACTCGATGAGCACCTTCTCGGCGAAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNN 42508 ||||||||||||||||||||||||||||| |||| Sbjct 362 CAGCACTCGATGAGCACCTTCTCGGCGAACGGGTCGCCCACCTGCACCGCGGGGCGCTTG 421 Query 42509 NNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCGAGGATCGACGCGCCGCCGATCCCGTCA 42568 || |||||||| |||||||||||| ||||| Sbjct 422 GTCGGGCCGGTCGAGTCGAAGGAGTCGGACGCGAGGATGCTCGCGCCGCCGATGCCGTCG 481 Query 42569 CCCCCCGTGCGCGCCGCGAAGAGGACGACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGC 42628 || ||||||||||| |||| ||||||||||||||||| | ||| |||||||| |||||| Sbjct 482 CCACCCGTGCGCGCACCGAACAGGACGACCTTGTTGCCGACGCCGGTCGCGTTCGCGAGC 541 Query 42629 TTGAGGTCCTCGTGCCGGAGCACGCCCACC 42658 |||||||| || || || |||||||||||| Sbjct 542 TTGAGGTCTTCATGACGCAGCACGCCCACC 571 >seq11147 Length=577 Score = 556 bits (616), Expect = 4e-154 Identities = 461/575 (80%), Gaps = 3/575 (1%) Strand=Plus/Minus Query 41033 GTGAAGACGTCCTGCACCTCGAGCGTCGG---CTCGCTGTCGGTCACGCCGATCCGCAGC 41089 ||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||| | Sbjct 577 GTGAAGACGCCCTGCACCTCGAGCTTCGCGCCCTCGCTGTCGGTCACGCCGATGCGCATC 518 Query 41090 ACCGGATAGCCGCGCCCCTCGCAGAGGCCGCGGAACTTCACGTCGTCCTCGCGGGGGACG 41149 ||||| ||| |||| || |||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 517 ACCGGGTAGTCGCGTCCTTCGCAGAGGCCGCGGAACTTCACGTCATCCTCACGGGGCACG 458 Query 41150 GTGACGATCACGCGCCCTGTCGACTCCGAGAAGAGGGCGGTCGCGGCGTCCACGCCGTCG 41209 || ||||||||||| || |||||||| ||||| |||||||| ||||||||||| |||||| Sbjct 457 GTCACGATCACGCGACCGGTCGACTCGGAGAACAGGGCGGTTGCGGCGTCCACTCCGTCG 398 Query 41210 CGCTCCATGAGCTCGGTGAGCCACACGCGCGCGCCGACGCCGAAGCGCATCACGCCCTCG 41269 ||||| |||| |||| | | ||| ||||| || ||||||||||||||||| ||||||||| Sbjct 397 CGCTCGATGATCTCGTTCAACCAGACGCGAGCTCCGACGCCGAAGCGCATGACGCCCTCG 338 Query 41270 GCGAGGGCCTGCGCGAGGCNNNNNNNNNNNNNNNNNNNNNNACTGGAGACCAGCCACTCG 41329 ||||| ||||||||||||| ||||| |||||| ||| Sbjct 337 GCGAGCGCCTGCGCGAGGCCTCCCTCGGAGAGGTCGTGCGCCGAGGAGATCAGCCATTCG 278 Query 41330 TCGCGTGCGGCGGCGATGAGACCGGCCAGGCGTTTCTCGGCGGCGAGGTCGACGGNNNNN 41389 ||||| || || | | |||||||| ||||| |||||| | ||||||||||| Sbjct 277 TCGCGGGCTGCCGACAGCAGACCGGCGAGGCGCTTCTCGCCCGCGAGGTCGACCTTCGGG 218 Query 41390 NNNNNNNNNNNGAGGTGGTCGTGCACGGTGTCGGCCCAGGCGGAGCCGGAAAGCTCCGTG 41449 ||||| | ||||||| || ||||| || |||||||| ||||| || Sbjct 217 GGCAGACCGCCCAGGTGCTGGTGCACGACCTCTGCCCATGCCGAGCCGGAGAGCTCGGTC 158 Query 41450 GACGTCACGCCGAGCAGATAGATGTTCTGGCCCTCGTCCTGCCATCCCGAGGGTATGCGG 41509 || || ||||||||| ||||||||||||||||||||||||||||| ||||| |||||| Sbjct 157 GAGGTGGTGCCGAGCAGGTAGATGTTCTGGCCCTCGTCCTGCCATCCGGAGGGGATGCGG 98 Query 41510 CGCGAGACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATCGGCACG 41569 ||||||||||||||||||| |||||||||||| || || || || ||||||||||||||| Sbjct 97 CGCGAGACGTCGTCGATGATGCCGAGCACGCCGACCAGCGGGGTCGGGTGGATCGGCACG 38 Query 41570 TCGCCGGTCTGGTTGTAGAACGAGACGTTCCCGCC 41604 ||||||||||||||||||||||||||||| ||||| Sbjct 37 TCGCCGGTCTGGTTGTAGAACGAGACGTTGCCGCC 3 >seq11016 Length=482 Score = 358 bits (396), Expect = 2e-94 Identities = 377/489 (77%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 44098 AGCACACGCGGCACCATGGCAACCCGAATCGTGTCGGCAAGGATCCTGATATCGAGGTTG 44157 ||||||| |||||| ||||||||||| | ||||||||||| || || |||||||| | Sbjct 482 AGCACACCAAGCACCACGGCAACCCGAACCAGGTCGGCAAGGACCCCGACATCGAGGTCG 423 Query 44158 ATACGATCTCGTTCCTCGACGAGGACGCCTCCCGATCGCGT--GGCGTCGTCCGATTGAT 44215 | ||||||||||||||||| || |||||| | || ||| ||| | || | |||| Sbjct 422 ACACGATCTCGTTCCTCGAAGAAGACGCCGC--GAAGGCGAAGGGCCTGATCAAACTGAT 365 Query 44216 CACGAGGAAGCAGGGATGGCTGTTCTTCCCCCTCCTGACGCTAGAGGGCATCAATCTCCA 44275 ||| | |||||||| |||||||||||||| || |||||||| ||||| | || ||||| Sbjct 364 CACCCGCAAGCAGGGGTGGCTGTTCTTCCCGCTGCTGACGCTCGAGGGGCTGAACCTCCA 305 Query 44276 CG-CCTTGAGCGTCCGACACCTTCTCTCCTCGCACCCGGTTCGT----GGCCGCTGGCAA 44330 | ||| | || | |||| | | || || | ||| || |||||| Sbjct 304 CTTCCTCGGGCTGAAGT-ACCT---CACGACG-ACGAAGAACGTCAAGGGACGCTGGACC 250 Query 44331 GAGCTGGGGATGCTCGCCGTGCGATTCTCGGCCGTGCTCGTCCCGGTGTTTCTCATGCTC 44390 ||||| || || |||| |||| ||| | | | || || || ||||| | |||||| Sbjct 249 GAGCTCGGCATCATCGCGCTGCGGTTCGCCCTCATTCTGGTGCCCGTGTTCATGATGCTC 190 Query 44391 CCTCTTGGCATGGCGTTCGCCTTCATGGGCGTCCAGCTCGCCGTCTTCGGCGTGTACATG 44450 || || || ||||| ||||||||||||||||| ||| |||| || |||||||| |||||| Sbjct 189 CCGCTCGGAATGGCCTTCGCCTTCATGGGCGTGCAGTTCGCGGTGTTCGGCGTCTACATG 130 Query 44451 GGGGCCTCGTTCGCTCCGAACCACAAGGGCATGCCGATCATCGCGTCCGATGCCCGCCTC 44510 || ||| ||||||| |||||||||||||||||||||||||||| | ||| ||||| ||| Sbjct 129 GGCGCCGCGTTCGCGCCGAACCACAAGGGCATGCCGATCATCGAGCCCGGCGCCCGTCTC 70 Query 44511 GACTTCTTCACCAAGCAGGTGGGCACCTCCCGCAACATACGCGGAGGCTGGTGGGCCACC 44570 ||||||||||||||||||||| |||||||||||||||| |||| || |||||| | ||| Sbjct 69 GACTTCTTCACCAAGCAGGTGCGCACCTCCCGCAACATCAGCGGCGGATGGTGGACGACC 10 Query 44571 TGGCTCATG 44579 ||||||||| Sbjct 9 TGGCTCATG 1 >seq7708 Length=568 Score = 327 bits (362), Expect = 3e-85 Identities = 252/299 (84%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 42911 ATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCGACG 42970 |||||||| ||||||||||| ||| |||||||| ||||| ||||| |||||||||||| Sbjct 568 ATGAACGACGGGTGGTTGTGCGACTCGGCCTTGAAGGTGACGGCCCAGCCCTCGCCGACG 509 Query 42971 TCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCGCTCGCGCATCTCGTCCGAG 43030 |||| ||||||||||||||| ||||| || ||||| ||||| || ||||||||| | Sbjct 508 TCGACGACGCCCGCGTTCTGACCCATGCCCACCATCAGGCGTTCCTTCATCTCGTCGCTG 449 Query 43031 ACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTAGGAGCAGTGCTCCGAC 43090 |||||||| ||||| | |||||| ||| ||||||||||||||||||||| | Sbjct 448 ACCTTCTGGCCGAAGCGGCGCAGGTAGTTCTTCGACGACTTGTAGGAGCAGTGCTCGCTC 389 Query 43091 CACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCGGCCGAGGATCTCCTTG 43150 ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 388 CACATGACGGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCGTCCGAGGATCTCCTTG 329 Query 43151 ATCCTCGCGTACTCGTCGTCCTTGAGGCCCAGCGCCGCGTAGGGCTGCTCCTTCTCCGG 43209 || | ||||||||||||| |||||| || || |||||||| |||||||||||||| || Sbjct 328 ATGCGCGCGTACTCGTCGGGCTTGAGTCCGAGGGCCGCGTACGGCTGCTCCTTCTCGGG 270 >seq10706 Length=312 Score = 147 bits (162), Expect = 6e-31 Identities = 99/111 (89%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 11258 CAGCGCTCCTACCAGGACCGCGAGGGCAACAACCGCACCGCGATCGAGCTCGAGGTGGAC 11317 |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||| Sbjct 290 CAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGAC 231 Query 11318 GAGATCGGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCACCCGGGCCGCC 11368 ||||||||||| ||||| |||||||| |||||||||||||| || ||| Sbjct 230 GAGATCGGCCCCTCGCTCCGGTACGCGACCGCGCAGGTCACCCGTGCGGCC 180 >seq132 Length=332281 Score = 136 bits (150), Expect = 1e-27 Identities = 142/185 (77%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 42806 GCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCG 42865 ||||||||||||||||||| |||| |||||| ||| || || ||||||| || | ||| Sbjct 225658 GCGCCGAAGCGCAGGGCGTTCATGGCCGCGATCGGCCGGGCACCCATGGTGAACACATCG 225599 Query 42866 CGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGG 42925 || | ||| ||||| ||||| |||||||| ||||| |||||||||| | || |||||| Sbjct 225598 CGCAGGATACCGCCGACACCGGTCGCCGCACCCTGATAGGGCTCGATATAGGACGGGTGG 225539 Query 42926 TTGTGACTCTCCGCCTTGAACGTGACCGCCCA---TCCCTCGCCGACGTCGATGACGCCC 42982 ||||| |||||| |||||| ||| | || || ||||||| |||| || || Sbjct 225538 TTGTGGCTCTCCATCTTGAA---GACAACGCAGTCGCCATCGCCGATATCGACAACACCG 225482 Query 42983 GCGTT 42987 ||||| Sbjct 225481 GCGTT 225477 >seq7968 Length=578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43908 TTCCTCCTGTTGGGCGACAGCTGGTTCCAGCTCCTTATCGCCGCCGCTCTCGGCATCCTG 43967 |||||| | | ||||||| ||||| ||||| | | |||||||| || | ||| || Sbjct 77 TTCCTCTGGATCGGCGACACCTGGTGGCAGCTGTTCACCGCCGCCGTCCTGGCGATCGTG 136 Query 43968 TTCACCCAGGTGGCTTTCCTCGCGCACGAGGCGGCACACCGGCAGAT 44014 ||||||||| | || ||||||| ||||| ||||| ||||||||||| Sbjct 137 TTCACCCAGATCGCGTTCCTCGGTCACGATGCGGCGCACCGGCAGAT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148222841979268