Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq595 181 2e-40 seq126 145 2e-29 seq444 131 4e-25 seq1158 104 6e-17 seq734 98.7 2e-15 seq1719 84.2 5e-11 seq974 84.2 5e-11 >seq595 Length=202500 Score = 181 bits (200), Expect = 2e-40 Identities = 341/500 (68%), Gaps = 6/500 (1%) Strand=Plus/Minus Query 167024 ATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 167083 ||| |||||||| || |||| ||||||||| || || || ||||| || |||||||| Sbjct 35952 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 35893 Query 167084 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 167143 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 35892 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 35833 Query 167144 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 167203 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 35832 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 35773 Query 167204 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 167260 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 35772 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 35716 Query 167261 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 167320 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 35715 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 35656 Query 167321 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 167380 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 35655 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 35596 Query 167381 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 167440 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 35595 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 35536 Query 167441 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACGTA 167500 ||||||||||| || || || || |||||||| |||||| || || || Sbjct 35535 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 35476 Query 167501 TATCTTCGAGTGTTTTTCCA 167520 ||| || ||||||||||||| Sbjct 35475 TATTTTTGAGTGTTTTTCCA 35456 >seq126 Length=461790 Score = 145 bits (160), Expect = 2e-29 Identities = 286/418 (68%), Gaps = 10/418 (2%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| ||| | || ||||||||||| ||| || | | ||||||| | |||| ||| Sbjct 313810 CAAGCTTCTACATCTGAGTTGTATGGCTTAGTTCAGGCAGTTCCTCAATCAGAAAGCACT 313751 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGTA 72534 || ||||||||||| ||||| | |||||||| |||| ||||||||||| | ||| Sbjct 313750 CCTTTTTATCCTCGTTCTCCTTATGCAGTTGCAAAAATGTATGCTTATTGGATTACCGTA 313691 Query 72535 AAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGA 72594 || ||| | || | ||| |||| || ||||| |||| || ||||| || | Sbjct 313690 AA--TTATAGAGAAGCATATGGTATGTTTGCGTGCAATGGTATTTTATTTAATCATGAAA 313633 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 |||| ||||| | || || ||||||||||| || | | ||| | || | | Sbjct 313632 GTCCTTTAAGAGGAGAAACTTTTGTCACTCGTAAAATTACTAGAGCGGTTTCTAA-AATG 313574 Query 72655 TCAATGG---TGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 72711 || | | || | | ||| | | | | || || ||||||| | ||||||||||| Sbjct 313573 GCATTAGGTATGCAGGATAAT--TTATTTTTAGGAAACTTAGATGCGAGAAGAGATTGGG 313516 Query 72712 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 72771 | |||| || ||||| || || || |||||| |||| |||| |||||| || || | Sbjct 313515 GGCATGCAAAAGATTATGTTGAGGCTATGTGGCTGATTTTGCAGCAAGATCAACCTGAAG 313456 Query 72772 ACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATT 72829 | ||||| |||||||| || || || | |||||||| || || | ||| |||| Sbjct 313455 ATTATGTAATTGCAACTGGTGTTACTACTACTGTTCGTGATTTTGTCAGTATGTCATT 313398 >seq444 Length=38654 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||| | ||| || |||||||| || || |||| | Sbjct 5499 CCACCACGGAGACGAAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAG 5440 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || || ||||| ||||| ||||| | |||| Sbjct 5439 AGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGG 5380 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | || ||||| || |||| |||| ||| || Sbjct 5379 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACC 5320 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| || ||||| Sbjct 5319 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || || || || || || | ||| || || || ||| Sbjct 5691 TCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAG 5632 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||||| | |||||| || || || || || || || | || || || Sbjct 5631 ATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGTCTTGACATTC 5572 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || ||||| ||||| ||||| || |||| ||||||||| Sbjct 5571 TCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACG 5512 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 5511 AAGATTTGCAT 5501 >seq1158 Length=25781 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || || ||||| || || || |||| | Sbjct 9253 CCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 9312 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || |||||||| ||||| |||||| |||| Sbjct 9313 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 9372 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| || || || | || ||||| || || | |||| || || Sbjct 9373 ATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACC 9432 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 9433 TCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 >seq734 Length=61306 Score = 98.7 bits (108), Expect = 2e-15 Identities = 209/303 (69%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 72519 GCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATT 72578 |||| |||||| ||| ||| || |||||| | ||| || |||| ||||| ||| Sbjct 13314 GCTTTTTGGATTTGTGTAAACTATCGTGAGGCTTATGGTATCTATGCTTGCAATGGTATT 13255 Query 72579 TGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAG-TTCGTGACTCGTAAAATCACGAA 72637 | |||||||| ||| || | ||||| || | ||||| ||||| || ||||| Sbjct 13254 TTGTTCAATCATGAGTCGCCTAGAAGAGGT-ATGACATTCGTCACTCGCAAGATCACTCG 13196 Query 72638 GGTGGTCGCGAATATTTTCAA---TGG-TGTCGAAAAATGCATGTATCTCGGTAATATAG 72693 ||||| || | ||| ||| | | | ||| | | ||||| ||||| || Sbjct 13195 ATATGTCGCCAAGGT---CAAGCTTGGCTCACAAGAAACTC-TCTATCTAGGTAACATCA 13140 Query 72694 ATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGC 72753 ||||||| | || ||||| | || | ||| |||||||| || |||||||||||||||| Sbjct 13139 ATGCCAAGCGTGACTGGGGTCACGCCAGGGACTACGTAGAGGCTATGTGGTTGATGCTGC 13080 Query 72754 AACAAGATACTCCGGATGACTATGTGATTGCAACAGG-GAAAACAACGAGCGTTCGTGAG 72812 |||| || | || || |||| ||| ||||| || || || | | || ||||||||| Sbjct 13079 AACAGGACAAGCCAGAGGACTTTGTTATTGCCACTGGCGAGACCCAC-TCTGTTCGTGAG 13021 Query 72813 TTC 72815 ||| Sbjct 13020 TTC 13018 >seq1719 Length=44522 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 52877 GAGAAATTTTACTTTACACCGAGTAGCAATCCG-TATGAAGTTTTTGAAACGAAATATGG 52935 ||||||||||| ||||| || || | | | ||| |||| ||| |||| || |||| Sbjct 43340 GAGAAATTTTATTTTACCCC-AGGCGATTTAGGCTATAAAGTATTTAAAACCAAGTATGC 43282 Query 52936 AAAACTAGGCGTGCTGATTTGCTGGGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTG-- 52993 ||| | || ||||||||||||||||| ||||||| | |||||||| | | ||| Sbjct 43281 CAAAATTGGTGTGCTGATTTGCTGGGACCAGTGGTATCCCGAAGCAGC---ACGGCTGAC 43225 Query 52994 -GCTCTAGAAGGCGCTGATTTTATTGTATACCCCACCGCCATCGGCTCGG 53042 || || || || |||||| | || ||||| ||||| ||||||| || Sbjct 43224 CGCGCTGATGGGTGCAGATTTTCTGGTTTACCCGACCGCAATCGGCTGGG 43175 >seq974 Length=18895 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | || || || ||||| || ||||| | | Sbjct 4837 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 4896 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || || || || || |||||||||| ||| |||||| ||| Sbjct 4897 AGGGTACGACCGTCCTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGG 4956 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 ||||| || || || ||||| || || || || || || || Sbjct 4957 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGAT 4997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179452140142996