Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq595 187 5e-42 seq126 145 2e-29 seq734 98.7 2e-15 seq915 86.0 1e-11 >seq595 Length=202500 Score = 187 bits (206), Expect = 5e-42 Identities = 344/503 (68%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 149168 ATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 149227 ||| || |||||||| |||| ||||||||| || || || ||||| || |||||||| Sbjct 35952 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 35893 Query 149228 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 149287 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 35892 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 35833 Query 149288 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 149347 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 35832 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 35773 Query 149348 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 149404 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 35772 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 35716 Query 149405 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 149464 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 35715 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 35656 Query 149465 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 149524 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 35655 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 35596 Query 149525 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 149584 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 35595 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 35536 Query 149585 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACATA 149644 ||||||||||| || || || || |||||||| |||||| || ||||| Sbjct 35535 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 35476 Query 149645 TATCTTCGAGTGTTTTTCCATTG 149667 ||| || ||||||||||||| || Sbjct 35475 TATTTTTGAGTGTTTTTCCAATG 35453 >seq126 Length=461790 Score = 145 bits (160), Expect = 2e-29 Identities = 286/418 (68%), Gaps = 10/418 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| ||| | || ||||||||||| ||| || | | ||||||| | |||| ||| Sbjct 313810 CAAGCTTCTACATCTGAGTTGTATGGCTTAGTTCAGGCAGTTCCTCAATCAGAAAGCACT 313751 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGTA 68523 || ||||||||||| ||||| | |||||||| |||| ||||||||||| | ||| Sbjct 313750 CCTTTTTATCCTCGTTCTCCTTATGCAGTTGCAAAAATGTATGCTTATTGGATTACCGTA 313691 Query 68524 AAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGA 68583 || ||| | || | ||| |||| || ||||| |||| || ||||| || | Sbjct 313690 AA--TTATAGAGAAGCATATGGTATGTTTGCGTGCAATGGTATTTTATTTAATCATGAAA 313633 Query 68584 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 68643 |||| ||||| | || || ||||||||||| || | | ||| | || | | Sbjct 313632 GTCCTTTAAGAGGAGAAACTTTTGTCACTCGTAAAATTACTAGAGCGGTTTCTAA-AATG 313574 Query 68644 TCAATGG---TGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 68700 || | | || | | ||| | | | | || || ||||||| | ||||||||||| Sbjct 313573 GCATTAGGTATGCAGGATAAT--TTATTTTTAGGAAACTTAGATGCGAGAAGAGATTGGG 313516 Query 68701 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 68760 | |||| || ||||| || || || |||||| |||| |||| |||||| || || | Sbjct 313515 GGCATGCAAAAGATTATGTTGAGGCTATGTGGCTGATTTTGCAGCAAGATCAACCTGAAG 313456 Query 68761 ACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATT 68818 | ||||| |||||||| || || || | |||||||| || || | ||| |||| Sbjct 313455 ATTATGTAATTGCAACTGGTGTTACTACTACTGTTCGTGATTTTGTCAGTATGTCATT 313398 >seq734 Length=61306 Score = 98.7 bits (108), Expect = 2e-15 Identities = 209/303 (69%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 68508 GCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATT 68567 |||| |||||| ||| ||| || |||||| | ||| || |||| ||||| ||| Sbjct 13314 GCTTTTTGGATTTGTGTAAACTATCGTGAGGCTTATGGTATCTATGCTTGCAATGGTATT 13255 Query 68568 TGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAG-TTCGTGACTCGTAAAATCACGAA 68626 | |||||||| ||| || | ||||| || | ||||| ||||| || ||||| Sbjct 13254 TTGTTCAATCATGAGTCGCCTAGAAGAGGT-ATGACATTCGTCACTCGCAAGATCACTCG 13196 Query 68627 GGTGGTCGCGAATATTTTCAA---TGG-TGTCGAAAAATGCATGTATCTCGGTAATATAG 68682 ||||| || | ||| ||| | | | ||| | | ||||| ||||| || Sbjct 13195 ATATGTCGCCAAGGT---CAAGCTTGGCTCACAAGAAACTC-TCTATCTAGGTAACATCA 13140 Query 68683 ATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGC 68742 ||||||| | || ||||| | || | ||| |||||||| || |||||||||||||||| Sbjct 13139 ATGCCAAGCGTGACTGGGGTCACGCCAGGGACTACGTAGAGGCTATGTGGTTGATGCTGC 13080 Query 68743 AACAAGATACTCCGGATGACTATGTGATTGCAACAGG-GAAAACAACGAGCGTTCGTGAG 68801 |||| || | || || |||| ||| ||||| || || || | | || ||||||||| Sbjct 13079 AACAGGACAAGCCAGAGGACTTTGTTATTGCCACTGGCGAGACCCAC-TCTGTTCGTGAG 13021 Query 68802 TTC 68804 ||| Sbjct 13020 TTC 13018 >seq915 Length=13476 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTC--CG 243340 || ||||||||||||||| | ||||||| | || || |||| ||| ||||| | Sbjct 120 AAGTCATTTGCTGAGCGTTTGGTCGCCTTTGCAGCTGTAGAGGGTA-TCT-TTTTCAGTG 177 Query 243341 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 243400 | || |||||| ||||||||||||| ||| || ||||||| || | | | Sbjct 178 GTAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACATTCT 237 Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 |||||||| |||||||||| |||||||| |||||| Sbjct 238 CTAACGAGCTCATCAGTCGTGACGAGGGTCTTCAC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102690903641700