Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1158 104 3e-17 seq444 104 3e-17 >seq1158 Length=25781 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | || | ||| | ||| |||||||||||||||||| || | Sbjct 9480 ACCTCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGA 9539 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||||||||||||||| || | || || ||||| | ||| Sbjct 9540 GAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGG 9599 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||||| | ||| | || || |||| || | | ||||| || | Sbjct 9600 AATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAA 9658 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||||| || || || || ||||| ||||| |||||||| Sbjct 9659 CCTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||||||| || ||||| || | || || || | || || Sbjct 9727 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCA 9786 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||||||||| || ||||| || || ||||| | ||| | | |||||| || | Sbjct 9787 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCTTGG 9846 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | || ||| || || || | |||||||| ||| Sbjct 9847 ATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTTG 9906 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || |||||||||||||||||||| || Sbjct 9907 CCAGTCAGTGTCTTTACAAAGATTTGCATGTT 9938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | | ||| | || | ||| | ||| ||||||||| || ||||| Sbjct 9018 TTATTGACCACCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTA 9077 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || | || || || |||| || || ||||||||||| || ||||| || || || || Sbjct 9078 GTCGGAAAGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATC 9137 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCG 42153 || ||| | | |||||||| | ||| | || || |||| || | | || || Sbjct 9138 GGGTGGGATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAAC 9196 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | |||||||| || || || | ||||| |||||||||||||| Sbjct 9197 CCTCAACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 >seq444 Length=38654 Score = 104 bits (114), Expect = 3e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 ||||| ||||||| | | ||| | ||||| || | ||| ||||||||| || |||| Sbjct 5735 TTTATTGACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGT 5676 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | |||| || || || | || || || ||||||||||| || ||||| || || |||| Sbjct 5675 AGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGT 5616 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTC 42152 | | ||| | | |||||||| | ||| | || || |||| || | | ||||| Sbjct 5615 CAGGTGGGATACCCTCCTTGT-CTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAA 5557 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||| |||||||| || || || | ||||| || ||||||||||| Sbjct 5556 CCCTCGACCTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| |||| ||||| || | || || ||||||||||||||||| Sbjct 5236 CTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAA 5177 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || || ||||| | ||| | | |||||||| ||| || |||| | Sbjct 5176 GATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGTCTTGACATT 5117 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || || || | |||||||| || || || || ||||| || Sbjct 5116 CTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTAAC 5057 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 5056 GAAGATTTGCAT 5045 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| | ||||| || | || || || ||||| || || || Sbjct 5464 CTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAA 5405 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || || ||||| | ||| | | ||||||||| ||| || |||| | Sbjct 5404 GATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTT 5345 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||| ||| || || | |||||||| || || || || ||||| || Sbjct 5344 CTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 5285 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 5284 GAAGATTTGCAT 5273 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||||||| || |||||||| | ||||| || | || || Sbjct 5025 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCA 4966 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || ||||| || || ||||| | ||| | | ||||||||| | Sbjct 4965 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGG 4906 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | || ||| || || || | || || || ||| Sbjct 4905 ATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTG 4846 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || || ||||||||||||||| Sbjct 4845 CCTGTCAGAGTTTTAACAAAGATTTGCATT 4816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543121934078880