Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq444 111 2e-19 seq1158 89.7 5e-13 seq32 87.8 2e-12 >seq444 Length=38654 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||| ||||||||||| | || || || | || ||||| ||| Sbjct 5019 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGC 4960 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | ||||| || || ||||| || |||||||| || || ||||| || || Sbjct 4959 TTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGGATCTTG 4900 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | ||||| | || || || | || | |||||||| ||| Sbjct 4899 GTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTGCCTGTC 4840 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | |||||| || || ||||||||| Sbjct 4839 AGAGTTTTAACAAAGATTTGCATT 4816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || ||||| ||||||||||| | || || || | || Sbjct 5485 AAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATC 5426 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| |||||||||||| | ||||| || || ||||| || || || || || || || Sbjct 5425 CTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTC 5366 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || ||| | ||||| | || || || | || | ||| Sbjct 5365 TTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGT 5306 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || ||||| |||||||| Sbjct 5305 CTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 >seq1158 Length=25781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || ||||||||||||||||| | || ||||| | || Sbjct 9268 AGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCC 9327 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | ||||| || || || ||||| || || || || || ||| Sbjct 9328 TCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCT 9387 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || || || | || | ||| Sbjct 9388 TGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTC 9447 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||| ||||| Sbjct 9448 TTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || |||||||| ||||| || | || || || | || Sbjct 9495 AAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATC 9554 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || || | || | || || ||||| || ||||| || || || || Sbjct 9555 CTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTC 9614 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || ||| | || ||| | || || || | ||| | ||| Sbjct 9615 TTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGT 9674 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | || || || ||||||||||| Sbjct 9675 CTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 >seq32 Length=13759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/250 (68%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 153675 TCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTT 153734 || || || ||| ||| ||||| || || | ||||| |||||| |||||||| || Sbjct 2750 TCGACAGTGAATTGGATGGCATCGGCAGCGGCACGAGTTCTCAAATAGTACATGCCAGTC 2809 Query 153735 TTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGC 153794 || | ||| ||||| | || | ||||| || | || || |||||| Sbjct 2810 TTAAGACCCTTCTTCCATGCGTAGAAGTGCATTGAGGTGAGCTTGGCAAAGTTGGGCTCG 2869 Query 153795 GCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATG 153854 || ||||| ||||| || ||||| ||||||||||| || || |||||||| |||||| Sbjct 2870 GCAATAAAGACGTTGAATGACTGTGATTGATCGATGAAGGCACCACGATCGGCAGCCATG 2929 Query 153855 TCAATCA-AGT--TTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCG 153911 ||||| | | | || || | || ||||| ||||| ||||| | | || | ||| Sbjct 2930 TCAATGAGACTACGTTGACGG---ATCTCCCAGACAGTCTTGTACAACTCCTTCAAGTCC 2986 Query 153912 TCGGGTATGC 153921 ||||| |||| Sbjct 2987 TCGGGGATGC 2996 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||||||||||||| |||| || || | | ||||||| | || || | |||| Sbjct 3686 GAGGCCAAGTTGCAAACAGCAACCTCCTCTGGTGAAGTGTATTGGATGATCTCAGTGCAC 3745 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || |||| |||||||| ||||||| || || || ||| |||||||| || Sbjct 3746 AAGTTGGAGCATGAGATGGTGCCGAGGTTTTGTTGGTTGGACTTGGCATTGCATGCATCC 3805 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 |||||||| ||||| || || || || || | |||| Sbjct 3806 TTGTACAAGATGTAGGGAGTACCAGTCTCGATCTGGG 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499561221916080