Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq4225 131 2e-25 seq1252 100 4e-16 seq104 91.5 2e-13 >seq4225 Length=585 Score = 131 bits (144), Expect = 2e-25 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 40991 GTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCT 41050 || ||| |||||||||||| ||||| ||||| || ||| || || ||||||||| || Sbjct 209 GTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGGCCACCGTGGGCTCGGTGATCCCT 150 Query 41051 ACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCG 41110 || | || || ||||||||||| ||||| ||||||||||||||||||||||||| |||| Sbjct 149 ACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATGGCGGCG 90 Query 41111 GTTCGTACCA 41120 || || |||| Sbjct 89 GTGCGCACCA 80 >seq1252 Length=525 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 41714 GAGGCGGTGAACTGCCACCACAACTATTGTGAGCAG-GAGAACCACTTCGGGCGCAACGT 41772 |||||||| ||||||||||||||||| |||||| | ||| |||||||||| |||| Sbjct 372 GAGGCGGTCAACTGCCACCACAACTAC-GTGAGCCGCGAGCACCACTTCGGCAAGGACGT 430 Query 41773 GTGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGG 41832 | | |||| |||||||| ||||| |||| || | | ||| |||||||||||||||| Sbjct 431 GATGCTCACCCGCAAGGGCGCGGTGAGTGCGCGCAAGGGCGAGATGGGGATCATTCCGGG 490 Query 41833 ATCCATGGGTACGAAGTCGTACATCGT 41859 |||||| | ||| | |||||| Sbjct 491 CAGCATGGGCGCCAAGAGTTTCATCGT 517 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || |||||| |||| |||||||||||||| | || | ||| |||| | | Sbjct 106 AGCACCTGGGCACGTTGGGCACCGGCAACCACTTCGTGGAGATCTGCCTGGATGAAGACC 165 Query 41439 AAGACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 | ||||||| |||||||||| ||| |||||||| |||||||| ||||||| Sbjct 166 AGCGCGTGTGGTTCATGCTGCACTCCGGCTCGCGCGGCGTGGGCAATGCCATCGGCACCT 225 Query 41499 ACTACATCGAGCGTGCGCAGAAGGA 41523 ||| |||||||| || || |||| Sbjct 226 ACTTCATCGAGCTGGCCAAGCAGGA 250 >seq104 Length=924147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 186529 TGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACC 186588 ||||| |||||||||||||||||||||||||||| | |||| || | ||||||| ||| Sbjct 774374 TGGTCGGAGTGAGAGGATTCGAACCTCCGACCCCGTCGTCCCGAACGACGTGCGCT-ACC 774432 Query 186589 AGACTGCGCTACACTCGGTAAACAG 186613 || ||||||||||||| || | ||| Sbjct 774433 AGGCTGCGCTACACTCCGTGACCAG 774457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739764235234800