Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq32 269 3e-67 seq2491 136 4e-27 >seq32 Length=13759 Score = 269 bits (298), Expect = 3e-67 Identities = 527/769 (69%), Gaps = 21/769 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || ||||||||||| || || ||||| || |||||||| || || ||||| Sbjct 4431 GCCACTCCCACCCTGTTCAATGCTGGCACCCCCTATCCCCAGATGTCCTCCTGCTTCCTC 4372 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | |||| |||||||||| || || | ||||| |||||| | ||||| | Sbjct 4371 GTCCAAATGAAGGACGACTCCATCGAGGGTATCTACGACACACTCAAGCAATGTGCTCTC 4312 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || || ||| ||| | | ||||| | ||| Sbjct 4311 ATCTCCAAGTCTGCTGGAGGCATTGGCATTGCTGTGCACAAGATCCGTGCTGCCCGCTCC 4252 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| |||||||||||||| || ||||| |||||||| || |||||| Sbjct 4251 TACATCCGCGGCACCAACGGCACCTCCAACGGTCTAGTCCCCATGCTCCGTGTGTTCAAC 4192 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || ||||| || ||||| ||||| || | | | |||||| | || || ||||| Sbjct 4191 GACACTGCCCGCTATGTCGACCAAGGTGGCGGAAAGCGCAAGGGTGCATTTGCAGTCTAC 4132 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| ||||| | ||| ||||||| || |||||||||||||| Sbjct 4131 CTCGAGCCATGGCACGCCGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAG 4072 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | ||| | ||||| || |||||| | ||||| || || ||| Sbjct 4071 GA---GGAGATGCGTGCTCGTGACTTGTTCTATGCCCTCTGGATTCCAGATCTCTTCATG 4015 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCC--CGGAC 94366 | || || ||| || | ||| | || || ||||| || | || || | Sbjct 4014 GAGCGTGTTGAGCGCAATGAGGAGTGGGCATTGTTCTGCCCCAACGA--GGCCAAGGGTC 3957 Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAA-GACTTGTATGCTCG--TTACGA----ATCG 94419 | | ||| | || | | || || |||||||| || | ||||| | | Sbjct 3956 TCGCTGACAAGTACGG-CCAAGAGTTCAACGACTTGTA--CTTGAAGTACGAGGCCACCC 3900 Query 94420 CAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTA 94479 |||| | || | ||||| | | ||| | || ||| ||| | || Sbjct 3899 CAGGTC-TTCCCCGCAAGGTGGTCAAGGCTCAAGATCTTTGGTTCGCCATCATCGAGTCC 3841 Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 ||| | ||||| ||||| ||||||||||||| |||||| | ||| |||||||||||| Sbjct 3840 CAGATCGAGACTGGTACTCCCTACATCTTGTACAAGGATGCATGCAATGCCAAGTCCAAC 3781 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 || || ||||||| ||| |||| || ||||||| ||||| || | || ||| Sbjct 3780 CAACAAAACCTCGGCACCATCTCATGCTCCAACTTGTGCACTGAGATCATCCAATACACT 3721 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCA 94648 || || || ||| ||||||| || ||| ||| ||| ||| |||| ||| Sbjct 3720 TCACCAGAGGAGGTTGCTGTTTGCAACTTGGCCTCGATCGCCCTGCCCA 3672 Score = 132 bits (146), Expect = 5e-26 Identities = 194/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 95096 TGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGT 95155 |||| | |||||||||||||| ||||| || |||||||||| ||||||||||||| | Sbjct 3218 TGCTCATTGCCCCCATGCCCACTGCCTCAACCTCGCAGATCCTCGGCAACAACGAGTGCT 3159 Query 95156 TCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCA 95215 |||| || | |||||||||| | ||| | || ||| | || || || ||| ||||| Sbjct 3158 TCGAGCCATACACCTCCAACATCTACTCTCGTCGTGTGTTGGCTGGAGAGTTCACCGTCG 3099 Query 95216 TCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGA 95275 |||||||||| | || || || | | | || || ||||| || | |||| Sbjct 3098 TCAACAAGCAGTTGCTTGCCGATCTCATGGCCCTTGGCTTGTGGACCCCAGAGATGAAGA 3039 Query 95276 ACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACA 95332 |||| | | ||||||| || ||| |||||||| | || || || |||||| Sbjct 3038 ACCACATCAT---CGCCAACCGTGGTTCCATCCAGAACGTACCAGGCATCCCCGAGGACT 2982 Query 95333 TCAAGGCGCTCTACAAGACCGTGTGGGAGATCC 95365 | |||| | | |||||||| || |||||||||| Sbjct 2981 TGAAGGAGTTGTACAAGACTGTCTGGGAGATCC 2949 >seq2491 Length=10632 Score = 136 bits (150), Expect = 4e-27 Identities = 404/623 (65%), Gaps = 0/623 (0%) Strand=Plus/Plus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||| || ||| || || || || | || |||| || | ||||||| ||| || Sbjct 5757 ATTTCACAAAGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCT 5816 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || | || || || || ||| ||| || | || |||||| | || || ||| Sbjct 5817 TATATTGGTGGAACAAACGGGACCAGCAATGGGATTGTACCTATGTTGAAAGTATTTAAC 5876 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || || |||||||||||||| || | | || ||| |||| || | || Sbjct 5877 GATACCGCCCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTAC 5936 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || |||| | ||| | |||||||| || ||||| || || Sbjct 5937 CTGGAGCCATGGCATGCAGATGTGCTGAGTTTTCTGGACCTGCGTAAAAACCATGGTAAA 5996 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | |||||||| | ||||| || || ||||| ||||| || |||| | Sbjct 5997 GAAGAACTTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGA 6056 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || ||||| | ||||||| | || ||||| ||||| || |||||| | Sbjct 6057 AGGGTAGAAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCA 6116 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || | ||| | || || | || |||| ||||||||| | || ||| Sbjct 6117 GATTGCTTTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGGACGTGCC 6176 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || | || |||| ||| | || |||| |||| | || || Sbjct 6177 CGTAAAACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACC 6236 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || || || || | |||| || || | | ||| ||| ||||||||||| | | Sbjct 6237 GGAACCCCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTA 6296 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||||| || || || || || || || ||| | ||||||||||| |||||| Sbjct 6297 GGAACCATCAAAAGTTCCAACCTTTGTACAGAAATTATAGAGTATACTTCCAAAGACGAG 6356 Query 94612 ATTGCTGTGTGTAACCTGGGCTC 94634 ||||||| |||||||||| ||| Sbjct 6357 GTTGCTGTATGTAACCTGGCCTC 6379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494640445176720