Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1158 102 8e-17 seq32 100 3e-16 seq444 98.7 1e-15 seq60 98.7 1e-15 >seq1158 Length=25781 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | |||||||||||||||||||||| ||| Sbjct 9253 CCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 9312 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || |||| |||| ||||| ||||| || || || Sbjct 9313 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 9372 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| | || || || | | || | ||| |||| ||| || Sbjct 9373 ATACCCTCCTTATC-TTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGAC 9431 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| || || || || ||||||||||| Sbjct 9432 CTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||||||||| ||||||||| Sbjct 9481 CCTCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAG 9540 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||| || ||||| | |||| | ||| |||||||| || || Sbjct 9541 AGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGA 9600 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || || || | | || | |||||| | ||| || Sbjct 9601 ATACCCTCCTTGTC-TTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAAC 9659 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || || || |||||||| ||||| Sbjct 9660 CTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||||| |||||| ||||| ||||| | | Sbjct 9058 GACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCCTCAAGTTGCTTACCAGCA 9117 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| ||||| ||||| || || || ||||| || ||||| ||| | || || || | Sbjct 9118 AAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTC-TTGAATCTTGGTCTTGAC 9176 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | ||| ||||| | || | || |||||||||| || || Sbjct 9177 GTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTT 9236 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 9237 GACAAAGATTTGCAT 9251 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||| |||||||||||| Sbjct 9709 CCACCACGGAGACGGAGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 9768 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||| ||||| | | |||| ||||| |||||||| || || Sbjct 9769 AGGGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG 9828 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | ||| |||| ||| ||| Sbjct 9829 ATACCCTCCTTATCTTGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 9888 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || |||||||| || |||||||| || |||||| Sbjct 9889 TCCAAGGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCATG 9936 >seq32 Length=13759 Score = 100 bits (110), Expect = 3e-16 Identities = 285/435 (66%), Gaps = 5/435 (1%) Strand=Plus/Plus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCG---C 154077 ||| |||||||||||| || || | |||||| || | ||||| || ||||||||| | Sbjct 4107 AGACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCTTGCGCTTTCCGCCAC 4166 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 | || ||||| | ||| | | | |||||| || || | |||||| | || ||| | | Sbjct 4167 CTTGGTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATGGGGACTAGACCGTTGG 4226 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCA-CTTGATGCACGTTAACG 154196 |||||||||||| ||| | | || | || || | |||| ||||| || | Sbjct 4227 AGGTGCCGTTGGTGCCGCGGATGTAGGAGCGGGCAGCACGGATCTTG-TGCACAGCAATG 4285 Query 154197 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCG 154256 |||||||| || | |||| || ||| ||| || | || || |||||| || Sbjct 4286 CCAATGCCTCCAGCAGACTTGGAGATGAGAGCACATTGCTTGAGTGTGTCGTAGATACCC 4345 Query 154257 TCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTT 154316 |||||| ||||| | || | ||| || || |||| || ||| | | || Sbjct 4346 TCGATGGAGTCGTCCTTCATTTGGACGAGGAAGCAGGAGGACATCTGGGGATAGGGGGTG 4405 Query 154317 CCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTAC 154376 || || || ||||||||| | || || || || | | || || | | |||| Sbjct 4406 CCAGCATTGAACAGGGTGGGAGTGGCATGAGTGAAGTATCTCTGTGACAAGAGGTGGTAG 4465 Query 154377 GTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATG 154436 || ||||||| | || || || |||||||| || || || | || ||||| | | | Sbjct 4466 GTGCCGATGGCAGCCTCAATGTCGTCGCCGTGGATACCAAGGGACACACGCATCAAGAGG 4525 Query 154437 TGCTGCGGACGTTCG 154451 || || ||||| ||| Sbjct 4526 TGTTGGGGACGCTCG 4540 >seq444 Length=38654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||| ||||||||||| Sbjct 5727 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 5668 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| ||||| | | |||| ||||| |||||||| || || Sbjct 5667 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG 5608 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || || || | | || | |||||| | ||| || Sbjct 5607 ATACCCTCCTTGTC-TTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGAC 5549 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || |||||||||| || || || || || ||||| Sbjct 5548 CTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||| |||||||| ||| Sbjct 5043 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAG 4984 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| ||||| || |||| | |||| ||||| |||||||| || || Sbjct 4983 AGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGA 4924 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | || |||| ||| ||| Sbjct 4923 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACC 4864 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||||||||| ||||| || ||||| Sbjct 4863 TCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCAT 4817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | |||||| |||||||| || ||||| | Sbjct 5238 GACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTGCTTACCAGCG 5179 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| || || |||||||| ||||| ||| || || | Sbjct 5178 AAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGTCTTGACA 5119 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||| ||||| | || | || |||||||| || || || Sbjct 5118 TTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTA 5059 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 5058 ACGAAGATTTGCAT 5045 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | ||||||||||| |||||||| ||| Sbjct 5499 CCACCACGGAGACGAAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAG 5440 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| ||||| || |||| | |||| ||||| |||||||| || || Sbjct 5439 AGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGG 5380 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | || |||| || ||| Sbjct 5379 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACC 5320 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| || || || || || || ||||| Sbjct 5319 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 >seq60 Length=27343 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||||| ||||||||||| Sbjct 11515 CCACCACGAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAA 11574 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||| ||||||| |||| ||||| |||||||| || || Sbjct 11575 AGGGTGCGACCATCCTCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGG 11634 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||| | ||| ||| Sbjct 11635 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACC 11694 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||| || | || || || |||| || || || || |||||||||| Sbjct 11695 TCGAGTGTGATGGTCTTTCCTGTCAATGTCTTAACGAAGATCTGCATGG 11743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496179387707040