Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq12552 253 5e-63 seq7375 159 9e-35 seq7870 138 3e-28 >seq12552 Length=250 Score = 253 bits (280), Expect = 5e-63 Identities = 206/250 (82%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 25896 TCCTTCTTTCCGTCCTCGGGGCTGACCGACCACTCGTAGTAGCCGGCCATGGGGATCACG 25955 |||||||| |||||||| | |||||||||| |||||||| |||||||||||||||| | Sbjct 250 TCCTTCTTCCCGTCCTCAGCATTGACCGACCATTCGTAGTACCCGGCCATGGGGATCAGG 191 Query 25956 CAGCGGCGCTTCTTGAAGGCCGACCGGAAGGCTGGCTTGGTGGCCACCGTCTCGATCCGG 26015 || | | |||||||||||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 190 CACCTGTGCTTCTTGAAGGCCGAGCGGAACGCCGGCTTAGTGGCCACCGTCTCGATGCGG 131 Query 26016 GCGTTGATGGTCGAGCCTTGCAGGCCCTTGGCCTTGGCCCAGAACGGCAGCAGGCCCCAC 26075 || ||||||||||| || ||||| ||| ||||| |||||||| |||||||||||||| Sbjct 130 GCATTGATGGTCGACCCCTGCAGCTTCTTTGCCTTCGCCCAGAAGGGCAGCAGGCCCCAG 71 Query 26076 GCCAACCGGGTGACCTGCCGGCCTTCGCCCCGGTCTAGGATCACCGATGCGCGTTGCGTG 26135 |||| ||| | |||| |||| ||||||||||| || | ||| | ||||| || || Sbjct 70 GCCAGCCGCTCCAGCTGCAGGCCGTCGCCCCGGTCCAGCACCACGGCCGCGCGCTGTGTC 11 Query 26136 GGCGCGAGGT 26145 ||||| |||| Sbjct 10 GGCGCCAGGT 1 >seq7375 Length=1704 Score = 159 bits (176), Expect = 9e-35 Identities = 162/210 (77%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 25601 TTCGCGATTGTTGCGTGGCGTGTTGACGGCGCGACTGACCCTGTACGCCTCCATGGATGG 25660 ||||| |||| | || || | || || || || ||||| | |||| |||||| | || Sbjct 1024 TTCGC-ATTGCTCCGAGGTGAATTTACAGCACGGCTGACTCGATACGTCTCCATCGCCGG 1082 Query 25661 AGGCGAGCTTGCCAGCAGCATCGCCATGGCATCGTCGGGGCTGGCGGCCATCCACTCATC 25720 ||| ||| || |||||||||||||| || || ||||| ||||| ||||| || Sbjct 1083 CGGCTCGCTGGCGAGCAGCATCGCCATAGCTTCATCGGGCGAAGCGGCAATCCATTCCAT 1142 Query 25721 GATCTGGCCGACCTGCAGCCACACCGGCATGCGGTCGTGGATGTCGGCCGAGACGCCGCT 25780 | ||| || | ||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1143 GCCCTGTGCGGGGTCCAGCCACACCGGCATGCGGTCGTGGATATCGGCCGACACGCCGCT 1202 Query 25781 GCTGTCGCCGGTGATGATGGTGAAGGTGCC 25810 ||||||||||||||| | ||||||||||| Sbjct 1203 GCTGTCGCCGGTGATCACTGTGAAGGTGCC 1232 >seq7870 Length=3162 Score = 138 bits (152), Expect = 3e-28 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 25605 CGATTGTTGCGTGGCGTGTTGACGGCGCGACTGACCCTGTACGCCTCCATGGATGGAGGC 25664 ||||||||||| || ||||| || ||||| ||||||| ||| |||| ||| | || ||| Sbjct 3006 CGATTGTTGCGGGGTGTGTTCACCGCGCGGCTGACCCGGTAGGCCTTCATCGCCGGCGGC 3065 Query 25665 GAGCTTGCCAGCAGCATCGCCATGGCATCGTCGGGGCTGGCGGCCATCCACTCATCGATC 25724 | || |||||||| |||||||| |||||||||| |||| || |||||||||| | Sbjct 3066 TCGGACGCGAGCAGCATGGCCATGGCGTCGTCGGGGCCTGCGGTCAGCCACTCATCGGCC 3125 Query 25725 TGGCCGACCTGCAGCCACACCGGCATGCGGTCGTGG 25760 ||||| || |||||||| ||||||||||||||| Sbjct 3126 TGGCCAGCCGTGAGCCACACTGGCATGCGGTCGTGG 3161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128776332739516