Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1158 113 4e-20 seq444 100 3e-16 seq60 93.3 4e-14 >seq1158 Length=25781 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||||||||| ||| | || ||| ||| || ||||| || ||| Sbjct 9511 GTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTGCTTACCA 9570 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| || || || || || || || ||||||||||| || || |||| Sbjct 9571 GCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGTCTTG 9630 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || ||| || |||| || | || || ||||| || || Sbjct 9631 ACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGTGAGGGTC 9690 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||| ||||| Sbjct 9691 TTAACAAAAATTTGCAT 9707 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| |||||||| ||||||||| Sbjct 9253 CCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 9312 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || || || || ||| |||| | || || |||||||| || Sbjct 9313 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 9372 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| || || || ||||| | |||| ||| || | || |||||| Sbjct 9373 ATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACC 9432 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || || || || ||||||||||| Sbjct 9433 TCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 >seq444 Length=38654 Score = 100 bits (110), Expect = 3e-16 Identities = 165/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||||||| Sbjct 5043 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAG 4984 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || || || || || |||| | || || || || || || Sbjct 4983 AGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGA 4924 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| || ||||| | |||| || || | || |||||| Sbjct 4923 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACC 4864 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTA 127123 || | ||| | || ||||| ||||||||||| ||||| || ||||| | || |||| Sbjct 4863 TCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATTG-TTGTTTA 4808 >seq60 Length=27343 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||| || Sbjct 11515 CCACCACGAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAA 11574 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || || || || ||| |||| | || || || ||||| || Sbjct 11575 AGGGTGCGACCATCCTCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGG 11634 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| || ||||| | |||| |||||| | | |||||| Sbjct 11635 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACC 11694 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| || | || || || |||| || || || || |||||||||| Sbjct 11695 TCGAGTGTGATGGTCTTTCCTGTCAATGTCTTAACGAAGATCTGCATGG 11743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475421260603680