Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq3951 706 0.0 seq3933 605 8e-169 seq2342 89.7 1e-13 seq7676 86.0 2e-12 >seq3951 Length=514 Score = 706 bits (782), Expect = 0.0 Identities = 463/511 (91%), Gaps = 0/511 (0%) Strand=Plus/Plus Query 21736 GACTGTGTGTTATGGCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGC 21795 |||||| ||| | || || || |||||||||||||||| ||||||||||||||| |||| Sbjct 4 GACTGTATGTCACGGGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGC 63 Query 21796 AGAATGCAAAGCCCTCCTGAATAAAGACCTTATCACTGTCGCCAGACAAATTAACCCGTA 21855 ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 64 AGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTA 123 Query 21856 CATCAAAGTAGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGT 21915 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 124 CATAAAAGTTGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGT 183 Query 21916 GGGCGCAGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAA 21975 |||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 184 GGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAA 243 Query 21976 AGGTGCATGTGATCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCT 22035 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 244 AGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCT 303 Query 22036 GATGACTCGTCGTGAGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGATTA 22095 ||||||||||||||| |||||||||| |||||||||||||| |||||||| |||| || Sbjct 304 CATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTA 363 Query 22096 ACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 22155 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 ACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 423 Query 22156 CATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGCTG 22215 ||||| |||||||||||||| |||||||||| ||||||||||| | | | | ||| Sbjct 424 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTG 483 Query 22216 GCGCTGGCGAACGCGACAATTACCGATATGC 22246 ||||||||||||| ||||||| || |||| Sbjct 484 AAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq3933 Length=4962 Score = 605 bits (670), Expect = 8e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Minus Query 13000 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13059 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 1605 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 1547 Query 13060 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13119 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 1546 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 1487 Query 13120 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13179 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 1486 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 1427 Query 13180 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13239 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 1426 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 1367 Query 13240 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13299 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 1366 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 1307 Query 13300 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13359 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 1306 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 1247 Query 13360 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13419 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 1246 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 1187 Query 13420 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13478 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 1186 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 1127 Query 13479 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13534 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 1126 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 1069 Query 13535 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13594 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 1068 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 1009 Query 13595 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13654 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 1008 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 949 Query 13655 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13714 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 948 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 889 Query 13715 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13774 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 888 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 829 Query 13775 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13834 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 828 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 769 Query 13835 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13894 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 768 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 709 Query 13895 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 13954 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 708 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 649 Query 13955 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14013 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 648 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 590 Query 14014 CGTCCTGA 14021 ||||| || Sbjct 589 CGTCCCGA 582 >seq2342 Length=4104 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 4624 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4683 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 1979 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 2038 Query 4684 GTT--TGTT-ATTGCTGC 4698 | | |||| |||||||| Sbjct 2039 GATGCTGTTCATTGCTGC 2056 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3027 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3078 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134068291654052