Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq11800 122 2e-23 seq5329 96.9 9e-16 seq287 86.0 2e-12 >seq11800 Length=371 Score = 122 bits (134), Expect = 2e-23 Identities = 180/253 (71%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 8777 TGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGG 8836 |||| || | |||||||||||| ||||| | ||| ||| || |||| || | Sbjct 270 TGATCGTGATCGACTACCTGCAGTTGATGA-GTGTGCCGG--GCAACAGCGAAAACCGCG 214 Query 8837 CCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTC 8896 | ||||| || | ||||| ||||| | | || | || ||||||||| |||| | Sbjct 213 CGACCGAAATCTCGGAAATCTCGCGTTCGTTGAAGGGCCTGGCCAAGGAACTCAACGTGC 154 Query 8897 CGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCG 8956 || | ||||||||||| ||||| || || ||| || | || | ||||||| || | Sbjct 153 CGGTGATCGCGCTGTCCCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCGG 94 Query 8957 TCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTA 9016 | ||| |||| || ||||| || || || ||||||||||| || ||| ||||| | || | Sbjct 93 TGATGGCCGACCTTCGCGAATCCGGCGCTATCGAGCAGGACGCGGACATGATCGTGTTCA 34 Query 9017 TCTACCGCGATGA 9029 |||||||||| || Sbjct 33 TCTACCGCGACGA 21 >seq5329 Length=346 Score = 96.9 bits (106), Expect = 9e-16 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 8866 CTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGA 8925 ||||| | || || ||||| || | |||||| ||||||| || ||||| || || || Sbjct 177 CTCAAGCTCATCGCCAAGGAGCTGCAGGTTCCGGTCATCGCCCTCTCGCAACTGAACCGT 118 Query 8926 GGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCG 8985 || | |||| | ||| | ||||| ||||| || ||| ||||| |||||||| || Sbjct 117 GGTCCCGAGCAGCGCACCGACAAGAAGCCCGCGATCAGCGACCTGCGAGAGTCGGGCTCG 58 Query 8986 ATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGA 9026 ||||||||||| |||||| || || || | | ||||||| Sbjct 57 ATCGAGCAGGACGCCGACATGGTCATCCTGCTGCACCGCGA 17 >seq287 Length=224423 Score = 86.0 bits (94), Expect = 2e-12 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 8846 TCGCCGAAAT-ATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904 || ||||||| | | || || |||||| ||| ||||||||| || ||||||||| Sbjct 66929 TCACCGAAATCACCACGGGC-CTCAAAGCGCTTGGCAAGGAACTCAACACGCCGATCATC 66987 Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA--TGT 8962 |||||||| ||||| || | | || | ||| | ||||||| |||| || | | Sbjct 66988 GCGCTGTCACAGCTCTCCCGTCAGGTGGAAAGCCGCGAAGACAAGCG-CCCG-CAGCTCT 67045 Query 8963 CCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACC 9022 |||| ||||| || || || ||||||||||||| ||||||||| | |||| | || | Sbjct 67046 CCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTATC 67105 Query 9023 GCGATGA 9029 |||| || Sbjct 67106 GCGACGA 67112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127525331569272