Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq915 118 2e-21 seq32 107 3e-18 >seq915 Length=13476 Score = 118 bits (130), Expect = 2e-21 Identities = 178/248 (72%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || |||||||| ||||| || |||||||| ||| ||||| |||||| || | | | Sbjct 286 CAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAT 227 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAA 160041 || ||||| | |||||| ||||||||||| |||| ||| |||| ||| || ||||| Sbjct 226 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGG-AGCAGAAGCTACCACTGAAAAA 168 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| ||||| || || ||||| || || | | |||| |||| || |||| || || Sbjct 167 GATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGA---CTTGGAGT--TG 113 Query 160102 G--GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCG 160159 | |||| || | ||||| ||||||||||| | || || ||| ||||| ||| Sbjct 112 GTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGCA 53 Query 160160 TTAAACAA 160167 ||||| || Sbjct 52 TTAAATAA 45 >seq32 Length=13759 Score = 107 bits (118), Expect = 3e-18 Identities = 292/437 (67%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 205264 GTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTG 205323 |||||||||||| ||||| | | || || | ||| || | ||| ||||| || Sbjct 4111 GTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCTTGCGCTTTCCGCCACCTTG 4170 Query 205324 GTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGT 205383 ||| || ||| | | ||||||| || || ||||| || || |||||||||| ||| Sbjct 4171 GTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATGGGGACTAGACCGTTGGAGGT 4230 Query 205384 CCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAAT 205443 ||||| |||| | |||| |||| |||| | | ||| | || |||||| Sbjct 4231 GCCGTTGGTGCCGCGGATGTAGGAGCGGGCAGCACGGATCTTGTGCACAGCAATGCCAAT 4290 Query 205444 CCCGCCAGAACACTTGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGA 205502 || |||| | |||||| ||| | || || | |||| || ||| |||||| || ||| Sbjct 4291 GCCTCCAGCAGACTTGGAGATGAGAGCACATTGCTTG-AGTGTGTCGTAGATACCCTCGA 4349 Query 205503 TGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCG 205562 |||| |||||| || | || || |||| || | || || || | || |||||| | Sbjct 4350 TGGAGTCGTCCTTCATTTGGACGAGGAAGCAGGAGGACATCTGGGGATAGGGGGTGCCAG 4409 Query 205563 CGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCA-AACACCTG-TAGGT 205620 | | ||| || ||||| |||| || ||||| |||| | | || | || ||||| Sbjct 4410 CATTGAACAGGGTGGGAGTGGCATGAGTGAAGTA--TCTCTGTGACAAGAGGTGGTAGGT 4467 Query 205621 CTCCA--GCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGG 205678 | | ||| || ||| | ||| |||||| ||||| | || | | ||| |||||| Sbjct 4468 GCCGATGGCA-GC-CTCAATGTCGTCGCCGTGGATACCAAGGGACACACGCATCAAGAGG 4525 Query 205679 TGTTGAGGTCTCTCCAT 205695 ||||| || | ||| || Sbjct 4526 TGTTGGGGACGCTCGAT 4542 Score = 102 bits (112), Expect = 1e-16 Identities = 325/494 (66%), Gaps = 14/494 (3%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGC-TTCTCAGATAGTACATGCCG 203899 || || ||||| || ||||| | |||||| || | |||||| |||||||||||| Sbjct 2750 TCGACAGTGAATTGGATGGCAT---CGGCAGCGGCACGAGTTCTCAAATAGTACATGCCA 2806 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| || ||||||| ||| |||| | |||||| || | || ||| | |||||| Sbjct 2807 GTCTTAAGACCCTTCTTCCATGCGTAGAAGTGCATTGAGGTGAGCTTGGCAAAGTTGGGC 2866 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 ||||| || | ||| | ||||| ||| |||||| ||||| || ||||| || || Sbjct 2867 TCGGCAATAAAGACGTTGAATGACTGTGATTGATCGATG-AAGGCACCACGATCGGCAGC 2925 Query 204019 CATATTGATAATGGTCTTC--TGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||| | || | | || | || |||||||| || |||||| ||| || | | Sbjct 2926 CATGTCAATGA--GACTACGTTGACGGATCTCCCAGACAGTCTTGTACAACTCCTTCAAG 2983 Query 204077 TGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | | || | | | |||| || ||| || || || ||| || | || | Sbjct 2984 TCCTCGGGGA-TGCCTGGTACGTTCTGGATGGAACCACGGTTGGCGATGATGTGGTTCTT 3042 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | |||| ||||| ||| | || || || | || || ||||| || Sbjct 3043 CATCTCTGGGGTCCACAAGCCAAGGGCCATGAGATCGGCAAGCAACTGCTTGTTGACGAC 3102 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 || ||||| | || ||| | || | | | | |||| |||| |||| ||||| Sbjct 3103 GGTGAACTCTCCAGCCAACACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCA 3162 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||||| ||||| | ||| ||| ||||||||||| || | ||||| ||| Sbjct 3163 CTCGTTGTTGCCGAGGATCTGCGAGGTTGAGGCAGTGGGCATGGGGGCAATGAGCAAGGA 3222 Query 204316 GTTGCGCACACCGT 204329 |||||| | ||||| Sbjct 3223 GTTGCGGAGACCGT 3236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795022190413920