Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq444 125 2e-23 seq1158 120 7e-22 seq974 93.3 1e-13 seq60 91.5 3e-13 >seq444 Length=38654 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||| ||||||||||||| ||||||||||| | ||| | ||||| Sbjct 5256 AGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCC 5197 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||||||||| || ||||| || || ||||| || Sbjct 5196 TCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCT 5137 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | || || || | ||||| ||| Sbjct 5136 TGGATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTC 5077 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| Sbjct 5076 TTACCAGTGAGGGTCTTAACGAAGATTTG 5048 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||||||||||| |||||| || | | ||| | ||||| Sbjct 5028 AGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 4969 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||| ||||||||||| || ||||| || |||||| || || Sbjct 4968 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCT 4909 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | || || ||||| || || ||| Sbjct 4908 TGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTC 4849 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| ||||| ||||| Sbjct 4848 TTGCCTGTCAGAGTTTTAACAAAGATTTG 4820 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || ||||||||||||| |||||| || | | ||| | ||||| Sbjct 5484 AGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 5425 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||| ||||||||||| || ||||| || || || || || Sbjct 5424 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCT 5365 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | ||| || || | ||||| ||| Sbjct 5364 TGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTC 5305 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| Sbjct 5304 TTACCAGTGAGGGTCTTGACGAAGATTTG 5276 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| ||||||||||||| ||||||||||| | || Sbjct 5721 CGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTA 5662 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || || ||||||||||| || ||||| || || || Sbjct 5661 CGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCC 5602 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | |||||| | || || || | Sbjct 5601 TCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGA 5542 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | || || || || ||||| Sbjct 5541 GTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTG 5504 >seq1158 Length=25781 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || ||||||||||| | |||||||| | | ||| | ||||| Sbjct 9496 AGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCC 9555 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | ||| || ||||| || ||| || || || Sbjct 9556 TCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCT 9615 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | || || || | ||||| ||| Sbjct 9616 TGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTC 9675 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||||||||| Sbjct 9676 TTACCGGTGAGGGTCTTAACAAAAATTTG 9704 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| ||||||||||||| ||||||||| | | || | ||||| Sbjct 9724 AGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 9783 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||||||||| || ||||| || || || || || Sbjct 9784 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCT 9843 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | || || ||||| ||||| ||| Sbjct 9844 TGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTC 9903 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| Sbjct 9904 TTGCCAGTCAGTGTCTTTACAAAGATTTG 9932 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||| | |||||| || | | ||| | ||||| Sbjct 9268 AGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCC 9327 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||||||||| || || || || || || || || Sbjct 9328 TCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCT 9387 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||| || | || || ||||| || || ||| Sbjct 9388 TGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTC 9447 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| || Sbjct 9448 TTACCAGTGAGGGTCTTGACGAAAATCTG 9476 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| ||||||||||||| ||||||||| | | || Sbjct 9031 CGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTA 9090 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || || ||||||||||| || || || || || || Sbjct 9091 CGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCC 9150 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| |||| ||| || | || || || | Sbjct 9151 TCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGG 9210 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | || || ||||| ||||| Sbjct 9211 GTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTG 9248 >seq974 Length=18895 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||||| | || | || || Sbjct 4852 AGGACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGACCGTCC 4911 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || || || || ||||| || || Sbjct 4912 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCCTCCTTGTCT 4971 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||||| || || || | || || ||| Sbjct 4972 TGGATCTTGGCCTTGACATTCTCGATGGTGTCTGAGCCCTCGACCTCAAGGGTAATGGTC 5031 Query 199598 TTACCCGTG 199606 ||||| ||| Sbjct 5032 TTACCTGTG 5040 >seq60 Length=27343 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || ||||||||||||| ||||||||| | | || Sbjct 11521 CGAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTG 11580 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| ||||||||||| ||||| || ||||| || || || Sbjct 11581 CGACCATCCTCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCC 11640 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | || || || | Sbjct 11641 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGT 11700 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 11701 GTGATGGTCTTTCCTGTCAATGTCTTAACGAAGATCTG 11738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178719465786594