Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq444 114 1e-20 seq1158 113 5e-20 seq60 96.9 4e-15 >seq444 Length=38654 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| ||||| ||||| || | || || || ||||||||||| || Sbjct 5008 CTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAA 4949 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | | ||||||||| |||||| |||||| | Sbjct 4948 GATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTT 4889 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || |||| || || || ||||| ||||| |||||||| Sbjct 4888 CTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAAC 4829 Query 46582 AAAGATTTGCATT 46594 ||||||||||||| Sbjct 4828 AAAGATTTGCATT 4816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || ||||| || | || ||||||||||| || ||||| Sbjct 5236 CTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAA 5177 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | | |||||||| |||||| |||||| | Sbjct 5176 GATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGTCTTGACATT 5117 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || | |||||||| || || || || || ||||| Sbjct 5116 CTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTAAC 5057 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 5056 GAAGATTTGCAT 5045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| ||||| ||||| || | || || || ||||||||||| || Sbjct 5464 CTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAA 5405 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | | ||||||||| |||||| |||||| | Sbjct 5404 GATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTT 5345 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| ||| || || | |||||||| || || || || || || || Sbjct 5344 CTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 5285 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 5284 GAAGATTTGCAT 5273 >seq1158 Length=25781 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| |||||||||||||| ||||| || | || ||||||||||| || ||||| Sbjct 9516 CTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAA 9575 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||| | || | | ||||||||| ||||| |||||| | Sbjct 9576 GATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTT 9635 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || | |||||||| || || || || || ||||| Sbjct 9636 CTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAAC 9695 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 9696 AAAAATTTGCAT 9707 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| | || || || ||||| || || || Sbjct 9744 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCAAGTTGCTTACCAGCAAA 9803 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | | |||||| || |||||| |||||| | Sbjct 9804 GATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTGGTCTTGACGTT 9863 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || |||| |||||||| ||||| ||||| || || || Sbjct 9864 CTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGTGTCTTTAC 9923 Query 46582 AAAGATTTGCATTTT 46596 |||||||||||| || Sbjct 9924 AAAGATTTGCATGTT 9938 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||||| || || | | ||| | || ||||| | || |||||||||||| |||| Sbjct 9017 ATTATTGACCACCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGT 9076 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||||| || || || |||| || || ||||| || || || || | || || || | Sbjct 9077 AGTCGGAAAGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGAT 9136 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | | ||||||||| ||||| |||||| || | | || || Sbjct 9137 CGGGTGGGATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAAC 9196 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||||| || || |||| || || |||||||||||||| Sbjct 9197 CCTCAACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 >seq60 Length=27343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || || ||||| | || || || ||||| |||||||| Sbjct 11550 CTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTCAAGTTGCTTACCGGCGAA 11609 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||||| || | | ||||||||| |||||| ||||| | Sbjct 11610 GATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 11669 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| || | || || || | |||||||| || || |||| || || Sbjct 11670 CTCGATGGTGTCAGAGCCC---TCGACCTCGAGTGTGATGGTCTTTCCTGTCAATGTCTT 11726 Query 46579 AACAAAGATTTGCAT 46593 ||| ||||| ||||| Sbjct 11727 AACGAAGATCTGCAT 11741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565143849746640