Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2491 165 8e-36 seq60 118 1e-21 seq1158 116 4e-21 seq444 116 4e-21 seq915 105 7e-18 seq974 91.5 1e-13 >seq2491 Length=10632 Score = 165 bits (182), Expect = 8e-36 Identities = 576/889 (65%), Gaps = 24/889 (3%) Strand=Plus/Minus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 ||||||||| || ||||| ||||||||| ||||| ||||| || | || ||| || | Sbjct 4864 TTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCAT 4805 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTG--TGTTGTAGTGCTTGGTGCCGATCAGGTCGACG 132720 | ||||||||| || || |||| | || | || | ||||| ||| || Sbjct 4804 CTCCATAAAATCAAACGGATTGGTGGCATGATATATT--TTGGTATAACCCAGTTCCTGC 4747 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||| ||||| || || ||||| || || || ||||| |||| ||| || | || | Sbjct 4746 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCA-TTCATCCCGAT 4688 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| ||||||| || || || | ||| | ||||| | ||||||||| || Sbjct 4687 CAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGAT 4628 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCG---TTGCACCAAATGCTTGAACATCAAGCA 132896 ||| | |||| || |||| | || | || | | | | || ||| Sbjct 4627 AATTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTAT---AAAGCAGGCA 4571 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 ||||| || ||||||| ||||| || |||||||| | || || || || || | || Sbjct 4570 GGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCC 4511 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 ||||| ||||| | |||||| | ||| || || | ||| || || ||||| | Sbjct 4510 TGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAAT 4451 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 ||| || || || ||||||||||||| || ||| | || | | || | || Sbjct 4450 GCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAAT 4397 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||||||| |||||||| || |||| || || || || | ||| || | ||| | || Sbjct 4396 CCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAA 4337 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 || | | ||| ||||| |||| | | ||||| ||||| || || ||| || Sbjct 4336 CAGCCTGTCTTTTTCTTC--AGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTT 4279 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||| ||||| ||| || ||||| ||||| || || || ||| | | Sbjct 4278 TCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGC 4219 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || ||||| ||| | | | || ||||| || || |||||||| || || || Sbjct 4218 TGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCA 4159 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG-TTGTCGTTCAAGCGCTCCCAGTC 133373 ||||| || || | || |||||||| |||||| ||| || ||| ||||||| Sbjct 4158 AAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGT-ATTTAAGTTGTCCCAGTG 4100 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 | ||| | || ||||| | || || ||||||| || || || || || Sbjct 4099 CTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTT 4040 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 ||||| ||| || || | |||| || || |||| ||||| ||| Sbjct 4039 ATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAAGCGG 3991 >seq60 Length=27343 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || |||||||| |||| ||||||| | | Sbjct 11741 ATGCAGATCTTCGTTAAGACATTGACAGGAAAGACCATCACACTCGAGGTCGAGGGCTCT 11682 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 11681 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCA 11623 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| || || || || || || | |||||||| |||||||| Sbjct 11622 ACAACGTCTTATCTTCGCCGGTAAGCAACTTGAGGATGGTCGCACCCTTTCGGACTACAA 11563 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 11562 CATCCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGT 11526 >seq1158 Length=25781 Score = 116 bits (128), Expect = 4e-21 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| || ||||| || || || ||||| ||||||||| | || || |||| Sbjct 9939 AAACATGCAAATCTTTGTAAAGACACTGACTGGCAAGACCATCACCTTGGAGGTTGAGGG 9880 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC 38357 |||| | | | | |||| | |||| || |||| || || ||||| || || | Sbjct 9879 TTCCGATACCATCGAGAACG--TCAAGACCAAGATCCAAGATAAGGAGGGTATCCCACCT 9822 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 |||||||| || ||||| | || || || || || || || | |||||||| |||| Sbjct 9821 GACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACCCTTTCCGAC 9762 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||||||| | || || || ||||| || ||| Sbjct 9761 TACAACATCCAAAAGGAGTCCACTCTCCACTTGGTTCTCCGT 9720 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || ||||||||| | || || |||| | Sbjct 9251 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTTGAGGGTTCT 9192 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || || | ||||| ||||| || || |||| | Sbjct 9191 GATACCATCGAGAACG--TCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCCGATC 9134 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | || || || || || || |||| || ||||| |||||||| Sbjct 9133 AACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACCCTTTCCGACTACA 9074 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 9073 ACATCCAAAAGGAGTCCACTCTCCATCTCGTCCTCCGT 9036 >seq444 Length=38654 Score = 116 bits (128), Expect = 4e-21 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || ||||||||| || || ||||| || || ||||| || || ||| | || ||||||| Sbjct 4813 AACAATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGG 4872 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC 38357 |||| | | | |||| | |||| || |||| ||||| ||||||||||| | Sbjct 4873 TTCCGATACTATCGAGAACG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCT 4930 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 |||||||| || ||||| | || ||||| || || || || | || || ||| ||| Sbjct 4931 GACCAACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGAT 4990 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||||||| | || || || ||||| || ||| Sbjct 4991 TACAACATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGT 5032 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || ||||| | || Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| | |||| || |||| ||||| ||||| || || | |||| Sbjct 5333 GATACTATCGAGAACG--TCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACC 5390 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | || ||||| || || || || | || || ||| ||| |||| Sbjct 5391 AACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACA 5450 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 5451 ACATCCAAAAGGAGTCCACCCTCCATCTCGTTCTTCGT 5488 Score = 100 bits (110), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| | || ||||||| | Sbjct 5045 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTCGAGGGTTCT 5104 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| || || || || | |||| Sbjct 5105 GACACCATTGAGAATG--TCAAGACCAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 5162 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | ||| || || ||||| || || | || || || ||||||| Sbjct 5163 AACAACGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTTTCTGACTACA 5222 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 5223 ACATCCAAAAGGAGTCCACTCTCCATCTCGTCCTCCGT 5260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| |||| ||||||| | Sbjct 5501 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAGGTCGAGGGTTCT 5560 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || || | ||||| ||||| || || | |||| Sbjct 5561 GACACCATTGAGAATG--TCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCTGACC 5618 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | || || || || || || || | || ||||| ||||||| Sbjct 5619 AACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACA 5678 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || ||||| || ||| Sbjct 5679 ACATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGT 5716 >seq915 Length=13476 Score = 105 bits (116), Expect = 7e-18 Identities = 177/251 (71%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||| || |||||||| || || | |||||||| | ||||| ||||| ||| || Sbjct 290 CAAACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGT 231 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 ||| |||||||| | ||| || || ||||||||||| |||| | ||| || || || Sbjct 230 CAATCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAA 171 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 |||| ||||| || || || || || |||| ||||| | || || ||| | | Sbjct 170 AAAGATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAA--TGACTT-GGAGTT 114 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGG 133129 || ||||| | || ||||| || ||||| |||||| || || || || || ||||||| Sbjct 113 GGTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTT-ACACATGGAATGGTCTCGATGG 55 Query 133130 CGTTCAACAAA 133140 | || || ||| Sbjct 54 CATTAAATAAA 44 >seq974 Length=18895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 38267 CACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGA 38326 ||| || || ||||| ||| | || ||||||| | | |||| | | | | | || | Sbjct 5040 CACAGGTAAGACCATTACCCTTGAGGTCGAGGGCTCAGACACCATCGAGAATGTCAAGGC 4981 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| |||||||| ||| |||| ||||| || | || | ||| || || Sbjct 4980 CAAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAACAACGTTTGATCTTCGCTGGTAA 4921 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||| |||| |||| || |||||| |||||||||||||| ||||| Sbjct 4920 GCAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATCCAGAAGGA 4873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500089133594880