Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq53 199 2e-45 seq1675 174 6e-38 seq126 165 3e-35 seq30 134 5e-26 seq617 113 2e-19 seq1158 107 8e-18 seq352 96.9 1e-14 >seq53 Length=825717 Score = 199 bits (220), Expect = 2e-45 Identities = 255/350 (73%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||| |||| || ||| | ||| | ||| |||| ||||| ||||| ||||| Sbjct 738075 AAAATGAAAAAAACTGCTGAAGACTATTTAGGTCAAACAGTAACTGAGGCAGTTATTACA 738134 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| || || ||||| ||||| || || |||||||| || ||| | || ||| Sbjct 738135 GTTCCTGCTTACTTTAACGATGCTCAACGTCAGGCTACTAAAGAAGCTGGAGAAATCGCT 738194 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||| | || ||| | || || || ||||| || || || ||||| || || |||||| || Sbjct 738195 GGTCTTAAAGTTATGCGTATCATCAATGAGCCAACTGCTGCTGCACTTGCTTATGGATTA 738254 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||| |||| || || |||||| | | || | ||||| |||||||| ||| Sbjct 738255 GATAAA---AAAGGAAATGATCAAAAAATTGCT---GTTTACGATTTAGGTGGAGGTACT 738308 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||||| ||||| ||| | | | |||||| |||||||||||| | || |||||| Sbjct 738309 TTTGATATCTCTGTTCTTGAATTAGGAGATGGTGTATTTGAAGTATTATCTACAAATGGT 738368 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTT 451623 |||||||| |||| ||||| ||| |||| | | ||| | || ||||| Sbjct 738369 GATACTCACTTAGGTGGTGATGATTTTGACCAAGTTATTATTGACTGGTT 738418 Score = 84.2 bits (92), Expect = 9e-11 Identities = 125/176 (71%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 127370 TTCCGAACTGGTCATATTTTTGTCTTTTATCTGAATCACTTAAAATAGAATATGCTTCCG 127429 ||||| | | |||||||||| | || || | || ||||||| | |||||| Sbjct 451126 TTCCGTATTTATCATATTTTTTACGATTTTCAGGATTGCTTAAAACTTCGTTTGCTTCGT 451185 Query 127430 AAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTTATCAGGATGAT 127489 |||||||| ||||||| || ||||||| | | ||| ||||| ||| ||||||| Sbjct 451186 TGATTTCTTTGAATTTTTTCTCTGCTTCTT---TATCATTCGGATTCAAATCGGGATGAT 451242 Query 127490 GTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTCTGCTTCAGTAGC--ATTTT 127543 ||| || | ||| || || |||||||||||||| |||||||| || ||||| Sbjct 451243 ATTTTCGGGCCAGTTTTCGATATGCTTTTTTAATTTCGGCTTCAGTGGCTGATTTT 451298 >seq1675 Length=53132 Score = 174 bits (192), Expect = 6e-38 Identities = 257/361 (71%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| |||| ||||| | ||| |||| ||||||||| |||| || ||| | | | Sbjct 13446 CTCCACAAGAGATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAGACTTTT 13505 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | ||| ||| ||||| || || || || ||||| |||||||||||||| ||||||| Sbjct 13506 TAGGTCAGGAAGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACGCACAAC 13565 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || || || ||||| || || | ||||| ||||||| ||| | || ||||| | Sbjct 13566 GTCAGGCTACAAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCATTAACG 13625 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 ||||||| ||||| ||| |||| ||||| | ||| ||| | ||| |||| | | Sbjct 13626 AACCTACTGCAGCGGCTTTAGCCTATGG-TTTGGA----TAAAGCACACA-AAGACATGA 13679 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | ||| | || ||||| | |||||| || || ||||| ||||||| | | | | | Sbjct 13680 AAATTGTTGTGTTTGACTGTGGTGGTGGTACACATGACGTTTCTGTATTGGAACTGGGTG 13739 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| || ||||||||||| |||| | |||||||| || || || ||||| || ||| Sbjct 13740 ATGGTGTTTTTGAAGTAAAATCAACTGACGGTGATACCCACCTGGGTGGTGATGACTTTG 13799 Query 451602 A 451602 | Sbjct 13800 A 13800 >seq126 Length=461790 Score = 165 bits (182), Expect = 3e-35 Identities = 326/479 (68%), Gaps = 10/479 (2%) Strand=Plus/Minus Query 240420 CATCAAGCAGCAATCGGTTCTGTTCCTAGGAGTGTAGATGATCCTATGATATCACATAAT 240479 ||||| ||||| | || || |||||||| | || ||||||| || | | || || || Sbjct 342613 CATCAGGCAGCTTTAGGGTCAGTTCCTAGATCTATAAATGATCCAATTACAACAAATGAT 342554 Query 240480 AATAATGTAAATGCTTTTATAAATTTACTTTTATGTTGTAAGGA--TTATAATGTTAAAA 240537 ||||| || |||| ||||| | || | || | || | || |||||| Sbjct 342553 GTGAATGTTTCTGGTTTTCTAAATATG--TTGGTCGCGTCACGAGATGCCAAAGTTAAAC 342496 Query 240538 GATTTGTATATGCTTCTTCCTCATCTGTATATGGTGATAATGAAATATTACCTAAAGTTG 240597 | ||| | ||||| | |||||| ||||| ||| |||| ||| || ||||| | Sbjct 342495 GCTTTATTTATGCAGCAAGTTCATCTACTTATGGAGATTCTGAAGGATTGCCAAAAGTAG 342436 Query 240598 AATCTAAAATTGGAAATGTTCTTTCACCATATGCTGCCACTaaaaaaaTAAATGAAATTT 240657 || | ||| || || | | || |||||||| || ||| | |||||||| | | Sbjct 342435 AAGATGTAATAGGTAAACCTTTGTCTCCATATGCAATTACAAAATATGTAAATGAACTAT 342376 Query 240658 ATGCTAATGTATTTTGGAGATGTTATGGTATTGAAACCATTGGAATGAGATATTTTAATG 240717 |||| | | ||| | ||| |||||| | ||||| || ||| |||| |||||||||| Sbjct 342375 ATGCCGAAATTTTTAGCAGAACTTATGGATTAGAAACAATCGGACTGAGGTATTTTAATG 342316 Query 240718 TCTTTGGACCTAGACAAGATCCTAAAGGTGCTTATGCTGCGGTTATTCCTAAATTTATT- 240776 | |||||| | |||||| ||| | || ||||||||||| || ||||| || ||| || Sbjct 342315 TTTTTGGAAGAAAACAAGACCCTGATGGCGCTTATGCTGCAGTAATTCCGAAGTTTGTTA 342256 Query 240777 --GATTTAATGAAACATAATAAAAATCCTATAATTAATGGTGATGGTACTTTTAGTCGTG 240834 | ||||||| | | ||| |||| |||||||||| ||||| | || | || | Sbjct 342255 GGCAATTAATGA---GTCTTGAAAGTCCTGTAATTAATGGAGATGGAAATTATTCACGCG 342199 Query 240835 ATTTCACTTTTATTGATAATGTAGTAGAAGCAAATTATTTAGCATTAAATACTACTAAT 240893 |||| |||| ||||||||||||| | || ||| | || || | ||||| | |||| Sbjct 342198 ATTTTACTTATATTGATAATGTAATTCAAATGAATGAATTGGCGATGAATACAAATAAT 342140 >seq30 Length=212980 Score = 134 bits (148), Expect = 5e-26 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 63830 CAGTAAATTGTTTAGTATCCTTATCACTCCACCAATTATTTAAATTACCATCCGCATCAA 63889 ||||||||||||| ||| | | ||||||| | | | ||| ||||| |||| | Sbjct 142962 CAGTAAATTGTTTTAAATCATCTGCTGTCCACCAGTCAACCAGATTTCCATCAGCATTAT 143021 Query 63890 ATCTTTTTCCTTGATCATCAAACCCATGAGTGATTTCATGAGCTATAACTACTCCAATTC 63949 ||||| || ||||||||| ||||||| |||||||||| | || ||| ||||||||| Sbjct 143022 ATCTTGCACCCGAATCATCAAAACCATGAGAGATTTCATGACCAATTACTGCTCCAATTC 143081 Query 63950 CTCCATAATTTTGTGCAATCGTAT-AATCTAAACTaaaaaaaGGTGGTTGTAAAATAGCA 64008 | || |||||| || || | | | || | |||| || || |||||||||||| Sbjct 143082 CGCCGTAATTTACAGC-TTCATCTGCCTGGTAATTGTAAAACGGCGGCTGTAAAATAGCA 143140 Query 64009 GCTGGAAATACAATTTCATTTAATAAAGGATGATAATAAGCATTTACTTGGTGTGGCAAC 64068 || |||||||||||||| || || | |||| | | ||||||||||| || ||| || Sbjct 143141 GCAGGAAATACAATTTCGTTGTATGATGGATTAAAGTAAGCATTTACAGTTTGCGGCGAC 143200 Query 64069 ATTTCCCATTTTTTAGTATCA 64089 ||| |||| | | | ||||| Sbjct 143201 ATTCCCCACTCTGTTTTATCA 143221 >seq617 Length=59612 Score = 113 bits (124), Expect = 2e-19 Identities = 334/510 (65%), Gaps = 9/510 (2%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || ||||| |||||||| || |||||||| || ||||| |||||||| || Sbjct 28182 AACCCAGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGCTGCTATTCTTTCAAACGAG 28123 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | || || || | | |||| | || | | ||||| | || | || || ||| | Sbjct 28122 GGTGGTGCCAAGGTTGCAGATCTCTTGCTTCTTGATGTCGCTCCATTGTCACTCGGACTC 28063 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAA 452170 || || |||||||| | ||||| || || ||| ||| ||| ||||||| || || Sbjct 28062 GAGACTGCTGGTGGTGTCATGACCAACTTGATTCCACGTAACACTACTATTCCATGCAAG 28003 Query 452171 AAGAGTCAAACATTTAGTACAGCAAGT--GATAACCAACCAGGTGTAACTATTCAAGTGT 452228 ||| |||| || | || | | | |||||||||||||| ||| ||| || || | Sbjct 28002 AAGTCTCAAGTCTTC--TCCACCTACTCTGATAACCAACCAGGAGTACTTATCCAGGTAT 27945 Query 452229 TTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAA 452288 | || || || |||| ||||| || || || || ||| || | ||| || || Sbjct 27944 TCGAGGGTGAGCGTGGTATGACCCGTGACAACCATTTACTCGGCAAGTTTGAGCTCTCTG 27885 Query 452289 ACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAA 452348 || || ||| ||| | ||| |||||| || || |||| | ||| | ||||| | Sbjct 27884 GTATCCCACCTGCTCCACGTGGAGTTCCTCAGATCGAGGTTACTTTCGATATCGATGCCA 27825 Query 452349 ATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAA-ATCAGAAAAAATTACA 452407 | ||||| | ||||| ||| | || || | ||||||| ||| |||| ||||| Sbjct 27824 ACGGTATCTTGAATGTCTCTGCCGAGGACAAGACCACTGGAAAGATC-CAAAAGATTACC 27766 Query 452408 ATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCA 452467 || || || || || ||| | || || || | || || ||||| | ||| || Sbjct 27765 ATCACCAACGACAAGGGTCGTCTCTCAAAGGATCAGATCGAGCGTATGGTTGCTGATGCT 27706 Query 452468 GAAAAATTCAAGG---ATGATGATGAACAA 452494 || || | ||||| | ||||| | |||| Sbjct 27705 GAGAAGTACAAGGCACAAGATGAGGCACAA 27676 Score = 100 bits (110), Expect = 1e-15 Identities = 195/286 (68%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || ||||| ||||| || || || || || | || || ||||| || || |||| Sbjct 28850 ATGCCGTCATTACAGTTCCAGCCTACTTTAACGACTCTCAGCGTCAAGCCACCAAGGATG 28791 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||| | || || | || || || || ||||| || || || ||| Sbjct 28790 CTGGTGTTATTGCCAAACTCAACGTCCAACGTATCATCAACGAACCAACTGCTGCAGCTA 28731 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || ||||| || | || || || | | || || |||||| | | |||||| Sbjct 28730 TTGCCTATGGTCTTGAGAAG--AAGAGCG-CTGGTGAGAAGAATATTCTCATTTTTGATC 28674 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 |||||||||| ||| |||| || | | | || || || || || ||||| |||| Sbjct 28673 TTGGTGGAGGTACTTTTGATGTCTCCCTCTTGACCATCGAGGACGGTGTCTTTGAGGTAA 28614 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||| || ||||||||||||| | || ||||| || ||||||| Sbjct 28613 AGGCCACTGCTGGTGATACTCATTTGGGTGGTGAGGACTTTGATAA 28568 >seq1158 Length=25781 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || |||||||| || ||||| | || || || || Sbjct 9479 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCC 9420 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || |||||||||||||| || || || || |||||| Sbjct 9419 GATACCATCGAGAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 9360 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || || ||||| || ||||| | ||| | | ||||| || Sbjct 9359 CAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAAC 9300 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| |||||||| || Sbjct 9299 ATTCAAAAGGAGTCAACCCTTCACTTGGT 9271 Score = 96.9 bits (106), Expect = 1e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || || || ||||| || || ||||| || ||||| ||| Sbjct 9707 ATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCT 9648 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || |||||||| ||||| || ||||| ||||| ||| Sbjct 9647 GACACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAA 9588 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || || || || || ||||| | ||| | | || || ||| Sbjct 9587 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAAT 9528 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 9527 ATTCAAAAGGA 9517 >seq352 Length=192972 Score = 96.9 bits (106), Expect = 1e-14 Identities = 187/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 63793 AACTTGTTAAATTGATCCTCTAATTTAAATGCTTCTTCAGTAAATTGTTTAGTATC--CT 63850 ||||| ||| || |||| ||| ||| |||| || |||||| ||||| | || Sbjct 120033 AACTTATTATATAGATCAACTACTTTTTTGGCTTTATCTTTAAATT---TAGTAGCGTCT 119977 Query 63851 TAT-CACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCA 63909 | || ||||||| | ||||||||||| || ||| || | | || ||||||||| Sbjct 119976 GCTGCAGTCCACCAGTCTTTTAAATTACCCTCTTTGTCATATTGTCTGCCCTGATCATCA 119917 Query 63910 AACCCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCAATC 63969 || ||||| || ||||| || | || || | ||||| | |||||||| || || Sbjct 119916 AATCCATGGGTCATTTCGTGTCCAATTACAGCACCAATAGCACCATAATTGATCGC-GTC 119858 Query 63970 GTATAATCTAAACT-aaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATT 64028 | | || ||| | ||| ||||| ||| | ||| | || || ||||| |||||| | Sbjct 119857 ATCTGCTCCAAAATCAAAGAAAGGGAATTGAAGAATTCCGGCAGGGAATACGATTTCA-T 119799 Query 64029 TAATA-AAGGATGATAATAAGCATTTAC 64055 ||||| | |||| ||||||||||||||| Sbjct 119798 TAATAGATGGATTATAATAAGCATTTAC 119771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975379649497256