Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq617 322 4e-82 seq149 181 8e-40 seq53 150 1e-30 seq1675 143 2e-28 seq1182 86.0 5e-11 >seq617 Length=59612 Score = 322 bits (356), Expect = 4e-82 Identities = 942/1435 (66%), Gaps = 32/1435 (2%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||||| ||||| | ||||| |||||||| | ||| || || || || || ||||| | Sbjct 27801 CGGCAGAGACATTCAAGATACCGTTGGCATCGATATCGAAAGTAACCTCGATCTGAGGAA 27860 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | ||||||||||||| || | | ||| | || || || || || Sbjct 27861 CTCCACGTGGAGCAGGTGGGATACCAGAGAGCTCAAACTTGCCGAGTAAATGGTTGTCAC 27920 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 || | || ||||||||||| | |||||| ||| | | ||| ||||| || | Sbjct 27921 GGGTCATACCACGCTCACCCTCGAATACCTGGATAAGTACTCCTGGTTGGTTATCAGAGT 27980 Query 517437 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 | || | || ||| || || || || ||||| || ||||| | ||| | |||| Sbjct 27981 AGGTGGAGAAGACTTGAGACTTCTTGCATGGAATAGTAGTGTTACGTGGAATCAAGTTGG 28040 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | |||||| || || || | || || || | |||| |||||||| || | | Sbjct 28041 TCATGACACCACCAGCAGTCTCGAGTCCGAGTGACAATGGAGCGACATCAAGAAGCAAGA 28100 Query 517557 TATTTTGAAGTTTTTCATCA-----GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGC 517611 || | || || || || |||||| ||||||||| ||||| | |||||| Sbjct 28101 GATCTGCAACCTTGGCACCACCCTCGTTTGA-----AAGAATAGCAGCTTGGACAGCAGC 28155 Query 517612 ACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 ||| || |||||||| ||||| || |||| || | || || | || ||| || || Sbjct 28156 ACCGTAGGCAACAGCCTCATCTGGGTTAATAGACTTGTTGAGCTCCTTGCCACCAAAGAA 28215 Query 517672 ATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731 || | ||||| | ||||| |||||||||| || || || || | ||||| || Sbjct 28216 ATCTTGGAGAAGGCTTTGAACCTTGGGAATACGAGTGGAACCACCGACGAGTACAACCTC 28275 Query 517732 ATGCACCTGTGAT--TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA 517789 || | || | || |||| || || ||| | || || || || || || ||| Sbjct 28276 GTGGA--TGGAACGCTTGTCCAACTTGGAGTCCTTGAGGACCTTCTCGACTGGGTCGAGA 28333 Query 517790 CCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-T 517848 | | | |||||||| | | || || ||||| ||| | || | ||| | | Sbjct 28334 CAACCACGGAACAAGTCAGCATTGAGCTCCTCGAAACGAGCACGGGTCAT--TGAAGTGT 28391 Query 517849 ATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 | || || || || || || | || |||| || | | || || || || ||||| | Sbjct 28392 AGAAATCGATACCCTCAAAGAGTGAGTCAATCTCTACAGAAGCCTGTGTGGATGAAGACA 28451 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT 517967 | ||| || ||||| ||||| || || ||||| | || | || | |||||| Sbjct 28452 AGGTACGCTTGGCACGCTCACAGGCAGTTCTTAGACGACGAAGAGCACGT--TGATTGGA 28509 Query 517968 --TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025 | | ||| | || | || | |||||| || |||||| | | || | ||| || Sbjct 28510 CATGAGATCCTTCTTGTGCTTGCGCTTGAACTCGTCAACAAAGTGGTTGACCATACGGTT 28569 Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 |||||| || ||||| ||||| | ||||| || | || || |||| | || | || Sbjct 28570 ATCAAAGTCCTCACCACCCAAATGAGTATCACCAGCAGTGGCCTTTACCTCAAAGACACC 28629 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || || | | ||| || | |||||| || || ||||| | ||||||||| || | Sbjct 28630 GTCCTCGATGGTCAAGAGGGAGACATCAAAAGTACCTCCACCAAGATCAAAAATGAGAAT 28689 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 |||| | || | || || ||||||||||| |||| ||| |||||||||||||| Sbjct 28690 ATTCTTCTCACCAGCGCTCTTCTTCTCAAGACCATAGGCAATAGCTGCAGCAGTTGGTTC 28749 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || || || | || || || ||||| || ||||| || |||||||| | Sbjct 28750 GTTGATGATACGTTGGACGTTGAGTTTGGCAATAACACCAGCATCCTTGGTGGCTTGACG 28809 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT--TCTTTACCA 518323 || || |||||||| || || ||||| ||||| ||||||| ||| | |||| ||| Sbjct 28810 CTGAGAGTCGTTAAAGTAGGCTGGAACTGTAATGACGGCATT-GTTGATGGTCTTACCCA 28868 Query 518324 ATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG- 518382 | | | | | || || | ||||| || | || | ||| || || || | ||| || Sbjct 28869 AGAAAGACTCG-GCTGTCTCCTTCATCTTTGTCAACACCATCGAAGAGATCTCTTCGGGT 28927 Query 518383 -GGAATATTGCTTGGATTCATT-TTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 |||| | ||| ||| |||| | ||| || | ||| || | || Sbjct 28928 TGGAAGGT--CTTCTTCTCACCCTTGAACTC-TACCTCGATGAGTGGCTTGTCTCCCTTG 28984 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 | || || || |||||||| | |||||||| ||||| || || || ||| | Sbjct 28985 TCAACGACCTTGAATGGCCAATGCTTCATATCAGATTGGACGACATGATCTGAAAACTTA 29044 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 | || || | || ||||||||||| | |||||| || || || || || |||||| Sbjct 29045 CGGCCGATAAGACGCTTTGCATCAAAGACAGTATTTGTAGGGTTCATAGCCACTTGATTC 29104 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 || || ||||||||||| ||| | ||||| |||||||| | ||||| ||| ||||| Sbjct 29105 TTTGCAGCATCTCCAATGAGACGCTCTGTATCTGTAAAGGCCACATAACTTGGTGTTGTT 29164 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 518675 | ||||||||||||||| |||||||| || || | ||||||||||||| |||| Sbjct 29165 CTATTACCTTGATCATTAGCAATAATCTCTACACGATCATTTTGCCATACTCCTA 29219 >seq149 Length=52016 Score = 181 bits (200), Expect = 8e-40 Identities = 729/1135 (64%), Gaps = 25/1135 (2%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 || || || ||||| | ||||||||| || || || || ||||| || |||| | | Sbjct 22824 AGGATGGCAGCTTGGACAGCAGCACCGTAGGCGACGGCCTCATCTGGGTTAATGGACTTG 22765 Query 517649 TTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAG--TTGTCTTACCTTAGGAATACGA 517705 || || | ||||| ||||| || | ||| || ||| ||| ||||| || ||||| Sbjct 22764 TTGAGCTCCTTACCGTTGAAGAACTCTTGCAACAAGGATTGG---ACCTTGGGGATACGG 22708 Query 517706 GATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT--TTATCCAGTTTTGAATCCA 517763 | || || || || | || || || || | || | || || || || || ||| Sbjct 22707 GTGGAACCACCGACGAGGACGATCTCGTGGA--TGGAACGCTTGTCAAGCTTGGAGTCCT 22650 Query 517764 ATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGA 517823 | || || || ||||| || |||| | | |||||||| | || || |||| Sbjct 22649 TGAGGACCTTCTCGACGGGGTCGAGACAGCCACGGAACAAGTCAGCGTTGAGCTCCTCGA 22590 Query 517824 ATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTC 517881 | || | || || ||| | || || || || || || | | || |||| || Sbjct 22589 AACGGGCACGGGT--GATTGAGGTGTAGAAGTCGATACCCTCCATGAGTGAGTCAATCTC 22532 Query 517882 AATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAG 517941 || | | ||||| || || || || | ||| |||||||| || || || || | || Sbjct 22531 GATTGAGGCTTGAGCAGATGAGGAGAGGGTACGCTTAGCACGCTCGCAAGCAGTGCGGAG 22472 Query 517942 TCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCT 517999 | || | || | || ||| | | | ||| | || | || | |||||| || Sbjct 22471 ACGACGGAGAGCACGT--TGGTTGGTCATGAGATCCTTCTTGTGCTTGCGCTTGAACTCA 22414 Query 518000 TCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCT 518059 || ||| | || || | ||| ||||| ||||| ||||| ||||| | ||| | || Sbjct 22413 TCGACAAAGTGAGTGACCATACGGTTATCGAAATCCTCACCACCCAAATGAGTGTCACCA 22354 Query 518060 GACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA--GAGACAAAAGAGTTACATCATGGG 518117 | ||||| | || | || | ||||| || | | || |||||| ||||| | Sbjct 22353 GCAGTAGCCTTGACCTCAAAGACACCATCCTCGATGGTGAGCAAAGAG--ACATCGAAAG 22296 Query 518118 TTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGAC 518177 ||||||| || | ||| || || || | | | | || || || || || |||| Sbjct 22295 TTCCACCTCCGAGATCGAAGATGAGGATGTGCTTCTCGGTGGAAGACTTCTTCTCGAGAC 22236 Query 518178 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 518237 | || |||| || |||||||| || || || || || | || | || |||| Sbjct 22235 CGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGTTGGACGGTGAGCTTGGCAA 22176 Query 518238 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 518297 | || || || || |||||||| | ||| || ||||| || || ||||| || || | Sbjct 22175 TGACACCAGCGTCCTTGGTGGCTTGACGTTGGGAGTCGTTGAAGTAGGCAGGGACGGTGA 22116 Query 518298 TAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTA 518357 | ||||| | | || ||||| | | | || || | ||||| || | Sbjct 22115 TGACGGCGTTGCTGACGGTCTTACCGAGGTGGGACTCAGCAGTCTCCTTCATCTTCAAGA 22056 Query 518358 AAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTT 518417 | ||| |||||||| | ||||| || | ||||| ||| | || |||| Sbjct 22055 GGACCATGGATGAAATCTCCTCTGGTGAGAAGGTCTTGGTCTCACCCTTGTACTCGACTT 21996 Query 518418 CAAAATATGGTTTATTACCAACATTA---ATAACTTTAAATGGCCAGTATTTCATATCTG 518474 || ||||| || | ||| | || | || || |||||||||| |||||||| | Sbjct 21995 GCAAGTATGGCTTGTCACCCTCCTTTTGGACGACCTTGAATGGCCAGTGCTTCATATCGG 21936 Query 518475 ATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTAT 518534 ||||||| |||||| || | | |||||| | || || ||||| ||||| || | Sbjct 21935 CTTGAACAACGTGGTCAGAGAACTTACGACCAATAAGACGCTTAGCATCGAAAATGGTGT 21876 Query 518535 TGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTG 518594 ||||||| || || ||| |||| | ||||| ||||| ||||| ||| | || | || Sbjct 21875 TGGTTGGGTTCATGGCAACTTGGTTCTTGGCAGCATCACCAATGAGACGCTCACTGTCGT 21816 Query 518595 TAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTT 518654 | || | || ||||| || || || || ||||| ||||| ||||| || ||||| Sbjct 21815 TGAAGGCGACGTATGAGGGGGTGGTACGGTTACCCATGTCATTAGCAATGATCTCAACAC 21756 Query 518655 TACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | | ||||||||||| || ||||| |||| ||||| ||||| |||||||| Sbjct 21755 GATCGTTTTGCCATACTCCAACACAGGAGTAAGTAGTTCCCAAATCGATACCAAT 21701 >seq53 Length=825717 Score = 150 bits (166), Expect = 1e-30 Identities = 235/329 (71%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 |||||||| ||||| || || | ||||| || |||| | ||||| || | ||| Sbjct 738397 TCAAAATCATCACCACCTAAGTGAGTATCACCATTTGTAGATAATACTTCAAATACACCA 738338 Query 518087 TCTTCAAGAGACAA-AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 ||| | | | ||| || || | |||| || || ||||| | ||| ||| | | | Sbjct 738337 TCTCCTA-ATTCAAGAACAGAGATATCAAAAGTACCTCCACCTAAATCGTAAACA-GCA- 738281 Query 518146 ATTCATT--TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 ||| || || || ||| ||||||| | ||||| |||| |||||||||||||| Sbjct 738280 ATTTTTTGATCATTTCCTT---TTTTATCTAATCCATAAGCAAGTGCAGCAGCAGTTGGC 738224 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| || || | || ||| ||||||||||| ||| ||| || |||||||| || || Sbjct 738223 TCATTGATGATACGCATAACTTTAAGACCAGCGATTTCTCCAGCTTCTTTAGTAGCCTGA 738164 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCA 518323 | ||| | ||||||||| || |||||||| |||||||| || ||||||||| || ||| Sbjct 738163 CGTTGAGCATCGTTAAAGTAAGCAGGAACTGTAATAACTGCCTCAGTTACTGTTTGACCT 738104 Query 518324 ATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 | ||| | || |||| ||||||||| Sbjct 738103 AAATAGTCTTCAGCAGTTTTTTTCATTTT 738075 >seq1675 Length=53132 Score = 143 bits (158), Expect = 2e-28 Identities = 253/366 (69%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| |||| | |||| || || | | |||||| |||| ||| Sbjct 13800 TCAAAGTCATCACCACCCAGGTGGGTATCACCGTCAGTTGATTTTACTTCAAAAACACCA 13741 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || | || ||| | || || ||||| || |||||||| ||||| | || | Sbjct 13740 TCACCCAGTTCCAATACAGAAACGTCATGTGTACCACCACCACAGTCAAACACAACAATT 13681 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||||| ||||||| | |||||| | |||||| || ||||| || ||||| ||||| Sbjct 13680 TTCATGTCTTTGTGTGC---TTTATCCAAACCATAGGCTAAAGCCGCTGCAGTAGGTTCG 13624 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || || ||| | | ||| ||||| || || ||||| || || || | | Sbjct 13623 TTAATGATCCTTTTTACAGTTAAACCTGCAATCTCACCAGCCTCTTTTGTAGCCTGACGT 13564 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 |||| || || ||||| |||||||| || || || || ||||||||||| | ||| || Sbjct 13563 TGTGCGTCATTGAAATAAGCAGGAACTGTGATCACAGCTTCAGTTACTTCCTGACC--TA 13506 Query 518327 TAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 || ||| || |||| ||||||||| | |||||||| ||||| | || ||| | Sbjct 13505 AAAAGTCTTCGGCAGTTTTTTTCATTTTCTGCAGAATCATTGCAGAAATCTCTTGTGGAG 13446 Query 518385 AATATT 518390 ||||| Sbjct 13445 TATATT 13440 >seq1182 Length=83562 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 322238 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 322297 |||||||| || ||||| |||||||||||||||||| | ||| | ||||| || Sbjct 39735 CCTAAACCATAGGCAAGGCTTGCTGCAGTTGGTTCATTGACTATACGTAATACATCCAAT 39676 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || || | ||| | | |||| | || || || | ||| |||||||||||| || || Sbjct 39675 CCGGCCAGTTTGCCGGCATCACGTGTAGCCTGACGCTGGCTGTCATTAAAATAAGCAGGA 39616 Query 322358 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAA 322392 |||||||| ||||| |||| ||| ||| ||| Sbjct 39615 ACAGTAATGACTGCCCGGTTAACTGGTGTTTTTAA 39581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780158341079692