Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq32 208 9e-49 seq341 145 9e-30 seq915 111 2e-19 seq277 100 3e-16 seq232 100 3e-16 seq702 91.5 2e-13 seq126 89.7 6e-13 seq1526 84.2 3e-11 >seq32 Length=13759 Score = 208 bits (230), Expect = 9e-49 Identities = 583/886 (66%), Gaps = 28/886 (3%) Strand=Plus/Plus Query 106442 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501 || ||||||||||| || |||||||| || ||||| ||||||||||| ||| || Sbjct 3659 TCCTTGACATACTTGGGCAGGGCGATCGAGGCCAAGTTGCAAACAGCAACCTCCTCTGGT 3718 Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561 ||||| | | || || || ||||||||||| | || || || | || | | Sbjct 3719 GAAGTGTATTGGATGATCTCAGTGCACAAGTTGGAGCATGAGATGGTGCCGAGGTTTTGT 3778 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 ||||| ||| ||||| ||||||||||| | |||||||| || || ||||| || Sbjct 3779 TGGTTGGACTTGGCATTGCATGCATCCTTGTACAAGATGTAGGGAGTACCAGTCTCGATC 3838 Query 106622 TGTGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAA-TGGCGTTG--GCCCG 106677 || |||| || || || ||| | ||| | | || | || | ||| | | || Sbjct 3839 TGGGACTCGATGATGGCGAACCAAAGATCTTGAGCCTTGACCACCTTGCGGGGAAGACCT 3898 Query 106678 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAG 106737 | ||||||||||| ||| | | | | ||||| | || | ||| | ||| Sbjct 3899 GGGGTG-GCCTCGTACTTCAAGTACAAGTCGTTGAACTCTTGGCCGTACTTGTCAGCGAG 3957 Query 106738 ACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 106797 ||| |||| || || ||||| | | ||| | || |||||| |||| ||| Sbjct 3958 ACCCTTGGCCTCGTTGGGGCAGAACAATGCCCACTCCTCATTGCGCTCAACACGCTCCAT 4017 Query 106798 GAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC 106857 ||| || ||||||||||| |||| | || | || | | || ||| || | || Sbjct 4018 GAAGAGATCTGGAATCCAGAGGGCATAGAACAAGTCACGAGCACGCATCTCCTCCTTGCC 4077 Query 106858 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917 ||||| || | || |||||||| | || || |||||||||||||| || ||||| Sbjct 4078 GTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGAC 4137 Query 106918 TGCGATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 ||| | | ||||| || | ||| |||| | |||||||| || ||| |||| || Sbjct 4138 TGCAAATGCACCCTTGCGCTTTCCGCCACCTTGGTCGACATAGCGGGCAGTGTCGTTGAA 4197 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034 || || ||||| || | | ||| | || || || || || || ||| | Sbjct 4198 CACACGGAGCATGGGGACTAGACCGTTGGAGGTGCCGTTGGTGCCGCG-------GATGT 4250 Query 107035 ATTGGCTCTCACATCATGGAT---GTGCA------TCCCAATACCCCCAGCCCACTTTGA 107085 | || | || || |||| ||||| | ||||| || ||||| |||| || Sbjct 4251 A--GGAGCGGGCAGCACGGATCTTGTGCACAGCAATGCCAATGCCTCCAGCAGACTTGGA 4308 Query 107086 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 107145 ||| | ||||| | | | || || | |||||||| | ||| ||||| ||||| | Sbjct 4309 GATGAGAGCACATTGCTTGAGTGTGTCGTAGATACCCTCGATGGAGTCGTCCTTCATTTG 4368 Query 107146 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205 || |||||||| ||||||||| || || || ||||||||||| ||||| || || Sbjct 4369 GACGAGGAAGCAGGAGGACATCTGGGGATAGGGGGTGCCAGCATTGAACAGGGTGGGAGT 4428 Query 107206 TGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 107264 || ||| |||| || || || |||| || ||| || | | | ||| ||||||| Sbjct 4429 GGCATGAGTGAA-GTATCTCTGTGACAAGAGGTGGTAGGTGCCGATGGCAGCCTCAATGT 4487 Query 107265 CTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | || |||||||| || | || ||||||||| || | || |||||| Sbjct 4488 CGTCGCCGTGGATACCAAGGGACACACGCATCAAGAGGTGTTGGGG 4533 >seq341 Length=37664 Score = 145 bits (160), Expect = 9e-30 Identities = 340/507 (67%), Gaps = 21/507 (4%) Strand=Plus/Minus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||||| |||||| || ||||||||||||||||| || | ||| ||||| || | || Sbjct 18853 GATCTGACGATCGAAACGACCTGGACGAAGGAGGGCTTGATCGAGGATGTCGGGTCTGTT 18794 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA-CCATCCATCTCTGTCAAAA 9303 || || || | ||||| | | | || || | || ||||||||||| | | Sbjct 18793 GGTTGCAGCAAACACAACGACATCC-TTCAATGGTGTGAATCCATCCATCTCAACGAGGA 18735 Query 9304 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCT 9363 | ||||||| || | || || ||||| || |||| | | | | || | |||| Sbjct 18734 GCTGGTTAAGTGTGTTCTCACGCTCATCGTT-GCTGCCTGAGAAGC----CTCCCTTGCC 18680 Query 9364 TT--------CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 || | ||||||||||||||| || |||| || || ||| ||| | ||| Sbjct 18679 ACGGGCACGACCAATGGCATCAATCTCATCGATAAAGATGATGCAGGGTGCATTCTTGCG 18620 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| |||||||| || || || | | || ||||||||||||||||||||||| Sbjct 18619 GGCCTGATCAAAGAGGTCACGCACACGAGCAGGACCTACACCAACAAACATCTCCACAAA 18560 Query 9476 GTTTG--CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9532 || || | | | ||| || ||| ||||| || | ||||| || |||| ||| Sbjct 18559 GTCTGAACCACTG---GTTGAGAAGAATGGGACGTTGGCCTCACCAGCGGTGGCCTTGGC 18503 Query 9533 GAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGC 9592 ||| | |||||||| || ||||| ||| |||||| |||||| ||||| |||||||| Sbjct 18502 GAGCAAGGTCTTACCAGTGCCTGGGGGACCTACGAGGATGGCACCACGTGGGATCTTGGC 18443 Query 9593 GCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATC 9652 ||| | | ||| ||| || | |||||| || | |||| |||||| | ||| | Sbjct 18442 ACCAATGTCGTGGTACTTCTTTGGGTCCTTGAGGAAGTTGACAAACTCTTCAATCTCAAC 18383 Query 9653 TTTGGCGGCGTCAATCCCCTCAACATC 9679 ||||| | ||| || ||||||| Sbjct 18382 CTTGGCCTCACCAAGACCAGCAACATC 18356 >seq915 Length=13476 Score = 111 bits (122), Expect = 2e-19 Identities = 312/470 (66%), Gaps = 17/470 (4%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGA 117154 |||||||||||| | |||| | ||| ||||||| ||||| | |||||| || | Sbjct 461 GAGGAGACGATCGG-CACAAAACTCGATGTACTGTGACATGGAGCGACTGTTCATGCCAA 403 Query 117155 TGAGATT-ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTC 117213 |||||| ||| ||||||| | ||| ||| | |||||| ||| || || || Sbjct 402 TGAGATCGACA-GGGAGTGATTGGGTGATAAACTCCTTCTCACACTCTACAGCATCGCGA 344 Query 117214 ACGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT--TGAAGAGCTCCA 117271 | ||||| | || ||| | || | | | | || | ||| | || ||||| Sbjct 343 ATGATGGACTCGAGAGTGTTGGCATCGAGACGGTT--GACAAGCTTGCTGTAGAGCAAAC 286 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 |||||| || ||| |||||||| || || || || || || ||||| | | Sbjct 285 AGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAATC 226 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | ||||| | || |||||||| | |||| | || | |||||| || ||| |||| Sbjct 225 CGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAAAAAGA 166 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAA 117451 ||||||| ||| ||||| || | | ||||| || || || || || || || Sbjct 165 TACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGACTTGGAGTTGGT---AA 109 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 |||| |||| ||||| | |||||||||| | |||||| | || | |||||| | || Sbjct 108 TCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGCATTAA 49 Query 117512 ATAACTGCTTCTTT---TCAGATCCATCCTTAATGTATTTGTCAATCAAT 117558 |||| | ||||||| |||| || |||||| || | ||||||||| Sbjct 48 ATAAATTCTTCTTTTTCTCAG---GATTCTTAATATAAGTATCAATCAAT 2 >seq277 Length=43748 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 |||| || |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 1200 TTCCAACAGCATCAATCTCATCGATAAAGACGATGCATGGAGTGTTTTCGCGGGCCTCCT 1259 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9483 ||||| ||||| || | ||| || ||||| ||||||||||| | ||||| | Sbjct 1260 TGAAGAGGTCGCGCACACGGCTGGGACCGACACCGACAAACATCTCGATAAAGTCGGAAC 1319 Query 9484 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 | | | || | || ||| ||||| | ||||| || |||| ||| | || ||| Sbjct 1320 CAG-AGATGGTGAAGAATGGGACGCCTGCCTCACCAGCTGTGGCCTTGGCAATGAGGGTC 1378 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||||| || || || || |||||| ||||||| ||||||||||| ||| Sbjct 1379 TTACCGGTGCCAGGGGGTCCAACGAGGATGGCACCCTTGGGAATCTTGGCACCA 1432 >seq232 Length=384298 Score = 100 bits (110), Expect = 3e-16 Identities = 236/353 (67%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 || |||||| |||| || | |||||| || || || |||| || | ||| |||||||| Sbjct 341352 CATAATAAAAGCATCTGCTAAACCTTGCACTCCTAATCCAACCGGGCGGTGGCGCATATT 341293 Query 106327 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || ||| || | || ||||| |||||||||| || ||| |||| || Sbjct 341292 TGAGTTTTCAGCTTCTTTTACCGGATAGTAATTTCTGTCGATTACTTTATTTAAGTTGCG 341233 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||| ||| ||||||| | | |||| ||| | |||||| | | | || Sbjct 341232 GGTTACACGTTTTGTGACGTTGTAAAGTGCTTCGTGATCAAATTTTCCGTTGTCA----- 341178 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 | | || |||| | | |||||| || || || ||||| || | ||||| ||| ||| Sbjct 341177 -ATAAACATTGGCAATGAGATTGAAGCTAAGTTACAAACTGCAATTTCATCTTTAGATGT 341119 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||| | ||| |||||||||||||| ||| ||| || || |||||||| ||||| Sbjct 341118 AAACTCCATAATCTCTGTACACAAGTTAGAAGAACGAATAGTTCCTAAATTCTTATGGTT 341059 Query 106567 ACTCTTTTTG--TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 | ||| | |||| ||||| ||||| | ||| || || || || || || Sbjct 341058 -CGATTTACGGTTTGC-TGCATCTTTGTACAACATATATGGTGTTCCGGTTTC 341008 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 2533 TACAGCATTACCTGCCAGTTTGTAAAGAGCTGAATCTGAAATACTGGGCAACTTATAATC 2592 ||| | ||| || || ||||||| | | |||| |||||| || | || |||| Sbjct 211789 TACCGAATTTCCAGCTTGTTTGTATAAATGCGAATTTGAAATTTCAGGAAGTTTGAAATC 211848 Query 2593 ACCTGGAAATCCCTGCAAATTGAAACATTCGCGGGGTGTAATCTTTCGTATACCTATCTC 2652 | ||||||| ||||| || | |||||||| | || || | |||| | ||| | || Sbjct 211849 ATCTGGAAAACCCTGAAATCTAAAACATTCTCTTGGAGTCAATTTTCTAAAACCAAAATC 211908 Query 2653 ATCCTTAATGAGTGGTACATTATGACCACCACCCCCCATGTTAGCGGTAAGGGTCGGGCA 2712 |||| |||||||||||||| || || ||||| || || || | || ||||| Sbjct 211909 GGTTGTAATAAGTGGTACATTATGTCCGCCCGTTCCCATATTGGCTGTTAAAGTAGGGCA 211968 Query 2713 TA-GATTACTCTTATTTTCTCGAACATAATATCTTCTGTATTGATATATAACATTTT 2768 | | || | || ||||||| |||||| | |||||| ||||||| ||| ||||| Sbjct 211969 AACGCTTGAT-TTGTTTTCTCTAACATATTGTCTTCTAAATTGATAAATACGATTTT 212024 >seq702 Length=79980 Score = 91.5 bits (100), Expect = 2e-13 Identities = 271/411 (66%), Gaps = 18/411 (4%) Strand=Plus/Minus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || || ||| ||||| || || ||||| || | || ||| || | ||| || || Sbjct 62022 GACCTGACGGTCAAAACGGCCCGGACGCAGCAAGGCCGGATCGAGAACATCGGGACGGTT 61963 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9301 ||||| ||||| | | | ||| ||||| || |||||||||||||| || Sbjct 61962 GGTCGCAGCGATCAGGATGACGCCT---TCATTGGCCTCGAAACCATCCATCTCGACCAG 61906 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC-CACCAGCACTGCGTT 9360 || ||||| | || ||||| ||||| ||||| || | | | ||| || | ||| | Sbjct 61905 CAGCTGGTTCAGCGTCTGTTCGCGTTCGTCATT-GCCGCCGCCCAGACCGGCGCCGCGAT 61847 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATT----TTCGCGG 9416 | || || ||||| || || || ||||||| || || ||| ||| ||||| Sbjct 61846 GACGGCCGACCGCATCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTCGCCT 61787 Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAG 9476 | ||| || | || || || | || || ||||| || ||||| || || ||| Sbjct 61786 G----TTCGAACATGTCACGCACACGCGATGCACCGACACCGACGAACATTTCAACGAAG 61731 Query 9477 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535 | | ||| | || | || ||| || ||||| | |||||| || ||||| || || || Sbjct 61730 TCGGAACCGG-AGATGGTGAAGAACGGCACATTGGCTTCACCGGCGATGGCGCGCGCCAG 61672 Query 9536 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT 9586 ||| |||||||| ||||| || ||| |||| || | || || ||||| Sbjct 61671 AAGCGTCTTACCGGTACCGGGAGGACCGACGAGCAGCACGCCGCGCGGAAT 61621 >seq126 Length=461790 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 22887 ATGGGATTTGCTCTACCTGCAGCAATCGGTGCAGCTATTGGTTCTGGTAAAAAGGT---T 22943 ||||||||| | |||| |||| ||| || ||| ||||| | || |||||| | Sbjct 327488 ATGGGATTTTCGTTACCAGCAGGAATTGGAGCAAGTATTGCAT-TGAATAAAAGGCCAGT 327430 Query 22944 TATTGTATTGAT-GGTGATGGAGGGTTTCAAATGAATATCCAAGAACTTCTCACAGTAAA 23002 | |||| ||| | || ||||| | | ||||| || || |||||| | | || | | Sbjct 327429 TGTTGTTTTGGTAGGAGATGGTTGTATGCAAATTAACATTCAAGAATTACAAACTATTAT 327370 Query 23003 AAAGTATGATCTACCAATTGAAATCATAATTCTAAATAATAGTGGCTATGGAATCATAAA 23062 | || | || ||||| ||||||| || |||||||||| || ||||| |||| Sbjct 327369 TAGAAATAAACTCCCAATAAAAATCATTGTTTTAAATAATAGAAGCCTGGGAATGATAAG 327310 Query 23063 ACAATTTCAAGATAGTTATTTTGATTC 23089 ||||||||||||||||||||||| || Sbjct 327309 GCAATTTCAAGATAGTTATTTTGAATC 327283 >seq1526 Length=11199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/189 (70%), Gaps = 14/189 (7%) Strand=Plus/Minus Query 9375 TCAATCTCATCAATGAAGACAATACA--TGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||||||||||||| || || || || |||||| || || || ||||| | Sbjct 2788 TCAATCTCATCAATGAACACGATGCAAGGGGCTGATTT--ACGAGCCTCTTGGAAGAGCT 2731 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 |||| || | ||||| || ||||||| |||||||||| |||| | | | | |||| Sbjct 2730 CGCGCACACGCTTGGCACCAACACCAATAAACATCTCCTCAAACTCT-----GAACCATT 2676 Query 9493 G-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 | ||||| |||| | | |||||| |||| ||| ||| || | ||||||||| Sbjct 2675 GATACTAATGAATGGGATACGTGCTTCACCAGCAAGAGCTTTGGCAAGCAAAGTCTTACC 2616 Query 9548 CGTACCTGG 9556 || ||||| Sbjct 2615 TGTTCCTGG 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589882110961680