Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015157.1 Length=125956 Score E Sequences producing significant alignments: (Bits) Value seq232 140 3e-28 >seq232 Length=384298 Score = 140 bits (154), Expect = 3e-28 Identities = 438/668 (66%), Gaps = 33/668 (5%) Strand=Plus/Plus Query 125076 AGAAGAATACTATGGTGCTAAGATTGATAAAGAGTTGGTATTTGCTAGTGTAGATGCAAC 125135 ||||||||| ||| || || || ||||| ||||| | | || | |||||| Sbjct 85420 AGAAGAATATTATAACGCCAATTCAGACAAAGAATTGGTGGCAGGTTCAGTCGCTGCAAC 85479 Query 125136 AGAACATAGTGTAATGTGTTCTTATGGA--ACAGAAGGTGA--AC--AAGCTTCACTAGA 125189 ||||||| ||||||||| | | | | ||||||||||| || || ||||| ||| Sbjct 85480 AGAACATTCTGTAATGTG--CATGGGAACGACAGAAGGTGAGTACGAAACCTTCAAAAGA 85537 Query 125190 ACACCTAATCACTAATGTAACACCATCAGGTATTATCTCTGTAGTATCTGATACGTGGGA 125249 |||| || | || ||| ||| ||| | ||| | || |||||||| ||||| Sbjct 85538 T----TAATTACAGAAGTTTATCCAAAAGGAATTGTTTCTATCGTTTCTGATACTTGGGA 85593 Query 125250 TTTCTGGAAGCTTGTAACAGAATATCTACCAAACCTAAAAGACAAGATTATGTCTCGTGA 125309 ||| ||||| || ||||||| || || |||| ||||||| | || | ||| | || Sbjct 85594 TTTATGGAAAGTTTTAACAGATTACCTCCCAAGATTAAAAGAAGATATCGTTTCTAGAGA 85653 Query 125310 AGGAACTTTGGTTATTCGTCCAGATAGTGGTGACCCAGTTAAAATCCTTTGTGGTGATGA 125369 ||||| ||||||||||||| || |||||||| ||| || ||| | || || || Sbjct 85654 AGGAAAAGTGGTTATTCGTCCTGACAGTGGTGATCCAATTTTAATTATCTGCGGAAATCC 85713 Query 125370 AGACTCTAAACTAGGTTCTGCAGAAAATAAAGGACTCATTGAATGTCTGTGGGATACCTT 125429 ||| ||| || ||| || |||||| | || |||| || |||||| || Sbjct 85714 TGACGGAAAAACAG---AACAAGAGAAAAAAGGAGTTATCGAATTGCTTTGGGATGTTTT 85770 Query 125430 TGGTGGAACTATCCAAGAGTCGACAGGGTTGAAACTTCTAGATTCACATATTGGTGCAAT 125489 ||||||||| | ||| | | ||| || ||| | | | |||| || || ||||| Sbjct 85771 TGGTGGAACGA--CAA-ACGATAAAGGTTTCAAAGAATTGGTTCCACAAATCGGAGCAAT 85827 Query 125490 CTACGGGGATTCTATCACACTAGAACGCCAAGATGAGATTATCAAGCGTCTTATTACTAA 125549 || || ||| ||| || ||| | | | ||| || | || | | | | || Sbjct 85828 TTATGGCGATAGTATTACCGTAGCAAGAGCAACTGAAATCTGCGAGAGATTAAAAGCGAA 85887 Query 125550 AGGTTTTG-TTC--CTAGTGTTGTATTAGGTATTGGTAGCTACACTTACCAATATGTCAC 125606 |||||||| ||| | | || || ||||| ||||| | ||| || ||||| || Sbjct 85888 AGGTTTTGCTTCTACAAACGTGGTTTTAGGAATTGGATCTTTCACGTATCAATACAATAC 85947 Query 125607 TCGTGATACACACGGTTCTGCAGTTAAAGCAACAT---GTGTACAAAAAGGTGAAGGTAA 125663 |||||||| |||| |||| | |||||||| | | | | ||| ||||| || | Sbjct 85948 ACGTGATACTTTTGGTTTTGCAATGAAAGCAACTTACGGAGAAGTAAACGGTGAGGGAA- 86006 Query 125664 TTACGAACCAATCTTCAAAGACCCTAAGACAGATAA---GAGTAAGAAATCTGCAAAGGG 125720 | ||||||||||||| |||| ||||| | | ||| |||||||| || || Sbjct 86007 -----GAGCAATCTTCAAAGATCCTATTACAGACGACGGAACTAAAAAATCTGCCAAAGG 86061 Query 125721 GTTATTGA 125728 ||| ||| Sbjct 86062 ATTAATGA 86069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402868684169534