Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq3418 250 6e-62 seq12163 201 3e-47 seq9435 194 4e-45 seq3006 178 3e-40 seq2422 100 7e-17 seq6269 86.0 2e-12 >seq3418 Length=506 Score = 250 bits (276), Expect = 6e-62 Identities = 313/416 (75%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 30659 GCCGGGCAGCGTGTTCCAGCT-CATGCGACCGGACAT-CA-ACCAGGAGGTGTACGGCCT 30715 ||||||||| |||| |||||| | | | ||| || || ||||||||||||||||||| Sbjct 90 GCCGGGCAG-GTGTACCAGCTGCGGGAGTCCG---ATGCAGACCAGGAGGTGTACGGCCT 145 Query 30716 GCCCGAAT--ATCTCAGCTCGCTTCACTCGGCCTGGCTGAACGAGTCGTCGACGCTGTTC 30773 |||||| | || | || || | || | || ||| ||||||||| | ||||||||| Sbjct 146 GCCCGAGTGGATGCCGGC-CG-TGCAGGCCGCGCTGCTCAACGAGTCGGCCACGCTGTTC 203 Query 30774 CGGCGGAAGTATTACGAAAACGGTAGCCACGCCGGCTTCATCCTCTACATGACCGA--CG 30831 ||||| ||||| ||| | ||||| ||||||||||||||||||||| ||||||| | Sbjct 204 CGGCGCAAGTACTACAACAACGGCTCGCACGCCGGCTTCATCCTCTACCTGACCGATTCC 263 Query 30832 CGGCGCAGAAGCAGGAGGATGTCGACAACATGCGCACGGCGTTGAAGAACGCGAAGGGGC 30891 | | || ||| | | || || | | ||||| |||| | ||| || || | Sbjct 264 CAG-GCGGAATC-GTCCGACGTAACCGGCCTGCGCGAGGCGCTCAAGGCGGCACGTGGTC 321 Query 30892 CGGGCAATTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAAAAGGACGGTATCCAGC 30951 ||||||| ||||| ||| ||||| || | |||| ||| || || |||||| | ||| Sbjct 322 CGGGCAACTTCCGGAACCTGTTCGTGCATTCGCCCAACGGCAAGAAAGACGGTCTGCAGA 381 Query 30952 TCATCCCAGTGTCCGAGGTCGCGGCGAAGGACGAGTTCTTCAACATCAAGAACGTGACGC 31011 ||||||| ||| |||||| ||||| ||||| |||||| |||||||||| |||||||| Sbjct 382 TCATCCCGGTGAGCGAGGTGGCGGCCAAGGATGAGTTCGCCAACATCAAGGGCGTGACGC 441 Query 31012 GCGACGACCTGCTCGCCGCGCATCGCGTGCCGCCGCAACTGCTCGGTATCGTGCCG 31067 |||||||| |||| || |||| |||||||||||||| ||||| || ||||||||| Sbjct 442 GCGACGACATGCTGGCGGCGCTGCGCGTGCCGCCGCAGCTGCTTGGCATCGTGCCG 497 >seq12163 Length=619 Score = 201 bits (222), Expect = 3e-47 Identities = 425/632 (67%), Gaps = 36/632 (6%) Strand=Plus/Minus Query 29146 TATCACGGCAATCTGTACTTCGACGAATATTTCTGGGTGCCGAAG--TTCCGCGAGCTGA 29203 || ||||| ||| | ||||||||||||| |||||| || | | ||| | |||||| Sbjct 613 TACCACGGGAATTTCTACTTCGACGAATTCTTCTGGA--CCTACGGCTTCAACCAGCTGA 556 Query 29204 ATACCGTTGCGTCGGGCATGGCGATGCACAAACGCTGGCGGCTGACCTACTTCAGCACGC 29263 | | || || ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 555 ACAAGGTCGCCAGCGGCATGGCGATGCACAAGAAATGGCGCAAGACCTACTTCAGCACGC 496 Query 29264 CGTCGAGTACGACCCATGAAGCCTACGCGTTCTGGAGCGGCGC-CGATGCGAATCGTG-- 29320 | || | | | | || |||||||||| ||||||| |||| || | | | | | Sbjct 495 CTTCCACCATGGCGCACGAAGCCTACGATTTCTGGACAGGCGAGCGCTTCAACAAGGGCA 436 Query 29321 -GGCGCGCGCCTAGCGATCGTATCCAGATCGACACGAGCCACGAAGCGCTCGTGCGAGGC 29379 | || | || ||| ||||| |||||| ||||||| ||| | | ||| Sbjct 435 AGCCGACCTCCCAGCAG--GTATC--GATCGATGTCAGCCACGGCCGGCTGGGCAGTGGC 380 Query 29380 --ATGCTGGGCGAGGACGAGCAGTGGCGTCAGATCGTCACCGTACTCGATGCGATCGAGG 29437 | |||| |||||||| ||||| ||||||||||| || ||||| ||| ||| Sbjct 379 CGACGCTG--CGAGGACGCTATCTGGCGGCAGATCGTCACAGTGCTCGACGCGGCCGACC 322 Query 29438 GCGGCTGCGACTTGTTCGACCTGGAGAGACTTCGGCGCCGGTACAGTGCAGAGGCTTTCG 29497 | || ||||| ||||||| || | |||| || |||| |||| Sbjct 321 GAGGGTGCGATCTGTTCGATGTG----------------GNNACAGCGCCGAGGAATTCG 278 Query 29498 CGAACCTGCTGATGTGCCAGTTCATCGACGATTCGGTGTC--GGTGTTCAAGCTGGCCGA 29555 | ||||||||||||||| ||||| | ||||| | | | | |||||| |||| | Sbjct 277 CCAACCTGCTGATGTGCGAGTTCGTGGACGA--CAGCGCCAGCGTGTTCCCGCTGACGAT 220 Query 29556 GCTGCAGCGCTGCATGGTCGACTCGTGGGAGGAATGGGCCGACGACTTCTCGCNNNNNNN 29615 |||||||| ||| ||| ||| |||| ||| ||||||| ||| ||| | Sbjct 219 GCTGCAGCCGTGCCAGGTGGACAGCTGGGTGGAGTGGGCCGGCGAGTTCAGCCCCTTCGC 160 Query 29616 NNNNCGTCCGTTCGGCTATCGCGAGGTGTGGGTTGGCTACGATCCGGCGCTGACTGGCGA 29675 || || | ||| | |||| ||||||| |||| ||||| ||||| ||| ||||| Sbjct 159 CATGCGCCCATATGGCGACCGCGCGGTGTGGATTGGGTACGACCCGGCCGAGACGGGCGA 100 Query 29676 CTCAGCCGGTCTCGTTGTCGTGGCGCCGCCGCGTGTCGAGGGTGGGACGTTCCGCGTGCT 29735 | ||||| |||| | ||||||||||| | || ||||| | |||||||||||| Sbjct 99 CAGCGCCGGCATCGTGATTGTGGCGCCGCCCCAAGTGCCCGGTGGCAAGTTCCGCGTGCT 40 Query 29736 CGAACGTCACCAGTTCCGCGGCAACGACTTCG 29767 || |||||||||||| |||| ||||||| Sbjct 39 GGAGCGTCACCAGTTCAAGGGCATGGACTTCG 8 >seq9435 Length=520 Score = 194 bits (214), Expect = 4e-45 Identities = 290/412 (70%), Gaps = 0/412 (0%) Strand=Plus/Minus Query 26422 CGATGTTTTCCGCGACGCAGCCGCAACCGAAGTCTTCGACGACATACGCGTCGTTCGACG 26481 ||||||| || | | | ||| | ||| |||||||||| || || ||||||| |||| Sbjct 491 CGATGTTCTCGACCAGGGCGCCACGGCCGTAGTCTTCGACCACGTAGTCGTCGTTGGACG 432 Query 26482 ATTCGTAGTTCTCGATTTGGTCGCGCTTCGGGTTGTCGATCAGCGAGCGACGGCGCGCAC 26541 | ||| ||||| | | ||| || ||| | ||||| || | || ||||| | Sbjct 431 ACTCGAAGTTCGCCACGCGGTTCTTCTGCGGCTGCTCGATGAGGTAACGGCGGCGGCCGT 372 Query 26542 CTTCCTGGAAGTAGATCGACAGGTTCTCCAGCTTCGTCACCATCATCGCGCGCTTCGGGA 26601 | ||| ||||||||||||| || |||||| || ||||||| ||| ||||| Sbjct 371 CGATCTGCCAGTAGATCGACAGATTGTCCAGCGAGGTGACCATCAGGGCGTTGGCCGGGA 312 Query 26602 AGAACGGCACACGCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTGACGATCAGGTCGG 26661 ||| ||||| ||| | | ||||| ||||||||||| || | | ||| || | Sbjct 311 CGAAAGGCACGATCACCGGCTGCAGGCCACCGATGCGCTTAGTGCCCAGCACCAGATCCG 252 Query 26662 CCGCGAGCTGCTCGGTCGGTGCCTGCGTCGTGTTGACGATCGGGAAATACTTGTCGTGCA 26721 | || |||||||||||||| ||| | | |||||| ||| ||||| ||||||||||||| Sbjct 251 CGGCCAGCTGCTCGGTCGGCGCCAGGTCCTTGTTGATGATGGGGAAGTACTTGTCGTGCA 192 Query 26722 GCAGCTCGCGGCCGCAGATCACAACGAGCCCCGTGTCTTCCTGGAACCACGGGTCGATCA 26781 ||| | |||||| ||| || || | |||| || | |||| |||||| ||||||| Sbjct 191 CCAGGTTGCGGCCCAGGATGACCACCAAGCCCGGATCCTGCTGGTGCCACGGCTCGATCA 132 Query 26782 TCGACGACACGATGTCCATCACGAGCGCGTCGAGGTTCACGTAGTCGCCGCC 26833 | ||||| | ||||| || |||||||| ||||| ||||||| |||| Sbjct 131 GGGTGGACACCACATCCATAACCAGCGCGTCCAGGTTGGCGTAGTCCGCGCC 80 >seq3006 Length=629 Score = 178 bits (196), Expect = 3e-40 Identities = 348/512 (68%), Gaps = 26/512 (5%) Strand=Plus/Minus Query 14124 GAAATCGGCGAGATAGCGATCGGTGATGCGCTGGCGCAGCTTCAGGTTTTCGAGCGGCGG 14183 ||||||||||| |||||| ||||||||||||||| |||| ||||||||| |||||||| Sbjct 517 GAAATCGGCGAAATAGCGGTCGGTGATGCGCTGGTTCAGCAGCAGGTTTTCCAGCGGCGG 458 Query 14184 GACCGGCGTGTAGTCGTAGTCGAT--CCATGT-ACCGCCCGACGTCAGCT-CGTCGGTCG 14239 ||||| ||||||||| ||||||| ||| | ||| | ||| |||| ||| || | Sbjct 457 CACCGGGGTGTAGTCGAAGTCGATGGCCAGGCGACCACTGGAC---AGCTGCGTGGGCAG 401 Query 14240 TGTTCGGCTCCGGGTCGTACCAGGCGCCGCCACCGATCAGCTCGCCGACCGAGACTTCGC 14299 ||| | || |||||||||||| | | |||| ||| | ||| | ||| | Sbjct 400 -GTTGGCGCCCTCGTCGTACCAGGCCGTGGCCCCGAGCAGGTATCCGGCG-----TTCAC 347 Query 14300 GGCGGAACCACGCGTTGATGTTCTCGATGATGTcg------cgcgcgcgcgACGGGTTGA 14353 | | |||| | | ||| | |||| |||| | Sbjct 346 C-----AGCTCGCGCTAANNNNNNNNNNNNNNNNNNNNNNNCGCACCAGCGAGGGGTGCA 292 Query 14354 GCGGGCCGTCGACGACGCCCATCTGTTCCTCGGCGATCGTGTCAGCGATCACCTGTGCCG 14413 |||| ||||||| | ||| ||| |||||||||| ||||| || | | ||| |||| Sbjct 291 GCGGCTTGTCGACGTAGACCAACTGCGCCTCGGCGATGGTGTCGGCCAGGATCTGCGCCG 232 Query 14414 AACGCGTGTAGTTCTCGAAGAAGAACTTGCCG-TCCGCGTCGCACGTGCGCGAGCCCCAG 14472 || ||| || |||||||| ||| || | || || ||| |||||||| |||||| Sbjct 231 TGCGGGTGGAGGTCTCGAAGGCAAACA-GCGGCTCATCGCTGCAGGTGCGCGATCCCCAG 173 Query 14473 AAACGGAAGCCGTTTCGGTTGACGAGCGTGGTGACCTGGTTCTCGTTCAGATAGCCGGCG 14532 || | | ||||| ||||| |||||||||| | | | || || ||||||| Sbjct 172 AACTTGTACCCGTTGGAGTTGATCAGCGTGGTGATATCGGCGGCATTGAGCATGCCGGCG 113 Query 14533 TCCGTTGCCGGGTCTTGCAAATCCCACGACACGTCCGCGCTGATGCCGGTCACGCCGTTG 14592 || || ||||| || |||| ||||| |||||| ||||||||||||||||||| Sbjct 112 TCGGTCGCCGGATCCTGCAGGTCCCAATGGACGTCCCGGCTGATGCCGGTCACGCCGGCT 53 Query 14593 ACGACGACGTTCGACAGCGTCTTGTGCCAGCC 14624 ||| | ||||| ||||||| ||| |||||||| Sbjct 52 ACGGCCACGTTGGACAGCGACTTATGCCAGCC 21 >seq2422 Length=594 Score = 100 bits (110), Expect = 7e-17 Identities = 184/262 (70%), Gaps = 16/262 (6%) Strand=Plus/Minus Query 29860 CAGCTCGTGCGGAAGTTCTACCCGGCGGCCGTTG----CATTGAACTACTCGCCCGAGGT 29915 ||||| || || |||||| ||||| | ||| | || | ||||||||||||||| Sbjct 590 CAGCTGGTCCGCCAGTTCTTCCCGGGG----TTGACCACCTTCAGCTACTCGCCCGAGGT 535 Query 29916 CAAAACTCGCCTTGTGCTGAAGGGG--CAATCCGTCATCCGCAACGGCCGCCTGCAATTC 29973 || || || || ||||| |||| | | || |||||| |||| || ||| ||| Sbjct 534 GAAGACGCGGCTGGTGCTCAAGGCGTTCGAT--GTCATCAAGAACGAGCGTCTGGAATAT 477 Query 29974 GACGCGGGATGGACCGACCTGGCCGCGGCGTTCATGGGAATCAAACAGACCATGACGGCG 30033 ||||| || ||||||||| || || | || | | | ||| | |||||| ||||| Sbjct 476 GACGCCGGCTGGACCGACATGACCCAGTCGCTGCTTGCCATCCAGAAGACCAGCACGGCC 417 Query 30034 AGCGGCCGCCACGCAACGTACACCGCCGACCGC-AACGAAGAGACGGGCCACGCCGACCT 30092 |||||||| || | || ||||| || | ||| || | ||| ||||||||||| || Sbjct 416 AGCGGCCGACAGACCACCTACACGGCGGGGCGCTCGCGCA-CGACCGGCCACGCCGATCT 358 Query 30093 GGCATGGGC-CTGCCTGCACGC 30113 ||| ||||| ||| ||||| || Sbjct 357 GGCGTGGGCGCTG-CTGCATGC 337 >seq6269 Length=575 Score = 86.0 bits (94), Expect = 2e-12 Identities = 131/183 (72%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 27158 CGGCTGGCGTTCGGCCTT--CG-TCGTGTCGGTGCGGCTCGCGATCGGACCGGATACCGA 27214 ||||||||||||||| || || | ||||||||||| | ||||| | ||| || Sbjct 10 CGGCTGGCGTTCGGCGTTGCCGCTGGTGTCGGTGCGACCAGCGATGGTGCCGTTGACGCC 69 Query 27215 CAGGCCGAGCTTTTCGCCTTCCAGCTCGGTCA---CGGGCAGGATGTTGATGCTCTTCAG 27271 || ||||| ||| ||||| | || ||| ||| ||||| ||||||||| | |||| Sbjct 70 CACGCCGATCTTCTCGCCCTTGAGGTCGATCACACCGGGC---ATGTTGATGGACGTCAG 126 Query 27272 GAATGCGCTCGATTCCTGCATTTTGGTTTCGAGCGTTTGCTGGACGGACGGCTCGACGGC 27331 ||| ||||| || || || || ||| | ||| ||||||||| || |||||||| Sbjct 127 GAAAGCGCTGCTCTCTTGGATGCGGGCTTCCATCGTCTGCTGGACGCCGGGTTCGACGGC 186 Query 27332 GAA 27334 ||| Sbjct 187 GAA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129633796457228