Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq3006 235 1e-57 seq3418 226 6e-55 seq9435 179 8e-41 seq12163 145 2e-30 seq1269 125 1e-24 seq2422 93.3 9e-15 >seq3006 Length=629 Score = 235 bits (260), Expect = 1e-57 Identities = 427/622 (69%), Gaps = 24/622 (4%) Strand=Plus/Minus Query 12083 TCGCCGTTCTGGAACAGATTGAAGTTCTTCAGTTTCTTCGGCAATGCCATGTT-CAT-TT 12140 ||||| | | |||||| |||| ||||||||||| | |||| | |||| || || Sbjct 611 TCGCCATCGTTGAACAGGTTGAGATTCTTCAGTTTGCTGGGCATGGACATGGGACAGGTT 552 Query 12141 ACTCCCTA----GTTATGCCG-TGACGCGCGCGGCGAAATCGGCGAGGTAACGGTCGGTG 12195 ||| | || | |||| ||| ||| | | ||||||||||| || ||||||||| Sbjct 551 CCTCAGTGCGGCGTCA-GCCGCTGATGCGGGTCGGGAAATCGGCGAAATAGCGGTCGGTG 493 Query 12196 ATGCGTTGGCGCAGCATCAGGTTTTCGATCGGCGGAACGGGCGTGTAGTCGTAATCGATC 12255 ||||| ||| ||||| ||||||||| | |||||| || || ||||||||| | ||||| Sbjct 492 ATGCGCTGGTTCAGCAGCAGGTTTTCCAGCGGCGGCACCGGGGTGTAGTCGAAGTCGATG 433 Query 12256 GCCAGCTTGCCGGCCTTGAGCGATTCGACGG--GGTTCGCGCTGTCGTCGTACCAAGCCG 12313 ||||| || || || | | || || |||| |||| ||||||||||| |||| Sbjct 432 GCCAGGCGACCA--CTGGACAGCTGCGTGGGCAGGTTGGCGCCCTCGTCGTACCAGGCCG 375 Query 12314 AGCCGCCGAGCAGATAGCCGTTTGCGATCA---GCTCGCGG-AATTTCGCGTTGATGCTT 12369 | | |||||||| || ||| ||| ||| ||||||| || Sbjct 374 TGGCCCCGAGCAGGTATCCG---GCGTTCACCAGCTCGCGCTAANNNNNNNNNNNNNNNN 318 Query 12370 TCGATCATGTCTTTCACGATCGACGGGTGCATCGGCTTGTCGACATAAACCATGTGTGCT 12429 | ||| | ||| ||||||| |||||||||||| || |||| || || Sbjct 317 NNNNNNNCG-----CACCAGCGAGGGGTGCAGCGGCTTGTCGACGTAGACCAACTGCGCC 263 Query 12430 TCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCGTGTAGTTCTCGAATGCGAACAGC 12489 || || || |||||||| || | ||||| ||||| ||| || ||||||| || |||||| Sbjct 262 TCGGCGATGGTGTCGGCCAGGATCTGCGCCGTGCGGGTGGAGGTCTCGAAGGCAAACAGC 203 Query 12490 GGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGATAGCCCGTCGAGTTGATGAGCGTC 12549 || ||||| |||||||||||| |||||||| || || | |||||||| ||||| Sbjct 202 GGCTCATCGCTGCAGGTGCGCGATCCCCAGAACTTGTACCCGTTGGAGTTGATCAGCGTG 143 Query 12550 GTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAA 12609 || | |||| | ||||| |||||| |||||||| || || |||| |||||| Sbjct 142 GTGATATCGGCGGCATTGAGCATGCCGGCGTCGGTCGCCGGATCCTGCAGGTCCCAATGG 83 Query 12610 ACATCCTTGCTGATACCCGTAACGCCATTGATGCCGACATTCGAAATCGTCTTGTGCCAG 12669 || ||| |||||| || || ||||| | | | || || || | || ||| |||||| Sbjct 82 ACGTCCCGGCTGATGCCGGTCACGCCGGCTACGGCCACGTTGGACAGCGACTTATGCCAG 23 Query 12670 CCCGTTTCCTCGTCGATCTTGG 12691 || | ||| |||||| ||| Sbjct 22 CCTTGCTGCTCATCGATCATGG 1 >seq3418 Length=506 Score = 226 bits (250), Expect = 6e-55 Identities = 281/376 (75%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 27026 CAAGAGGTGTACGGCTTGCCCGAAT--ATCTCGGCGCGCTGCACTCGGCATGGTTGAACG 27083 || |||||||||||| ||||||| | || |||| || |||| | || | | |||| Sbjct 129 CAGGAGGTGTACGGCCTGCCCGAGTGGATGCCGGC-CG-TGCAGGCCGCGCTGCTCAACG 186 Query 27084 AGTCGGCGACGCTCTTTCGTCGCAAGTATTACGAGAATGGATCGCACGCCGGTTTCATCC 27143 ||||||| ||||| || || |||||||| ||| | || || ||||||||||| ||||||| Sbjct 187 AGTCGGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCTCGCACGCCGGCTTCATCC 246 Query 27144 TGTACATGACCGATGC---GGCGCAAA-GTCAAAGCGATGTCGACAAGATGCGCGAGGCG 27199 | ||| |||||||| | |||| || ||| ||| || | ||||||||||| Sbjct 247 TCTACCTGACCGATTCCCAGGCGGAATCGTC----CGACGTAACCGGCCTGCGCGAGGCG 302 Query 27200 TTGAAGAACAGCAAGGGG-CCGGGGAATTTCCGAAACCTTTTCATGTACGCGCCGAACGG 27258 | ||| | ||| | || ||||| || ||||| ||||| ||| || | |||| ||||| Sbjct 303 CTCAAGG-CGGCACGTGGTCCGGGCAACTTCCGGAACCTGTTCGTGCATTCGCCCAACGG 361 Query 27259 CAAGAAAGACGGCATCCAGCTCATTCCGGTTTCCGAGGTCACGGCGAAAGACGAGTTCTT 27318 |||||||||||| | ||| |||| ||||| |||||| |||| || || |||||| Sbjct 362 CAAGAAAGACGGTCTGCAGATCATCCCGGTGAGCGAGGTGGCGGCCAAGGATGAGTTCGC 421 Query 27319 CAACATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCGCCTCAGCT 27378 |||||||||| || |||||||||||| |||| ||||||| ||| | ||||| ||||| Sbjct 422 CAACATCAAGGGCGTGACGCGCGACGACATGCTGGCGGCGCTGCGCGTGCCGCCGCAGCT 481 Query 27379 CATGGGGATCGTGCCG 27394 | || ||||||||| Sbjct 482 GCTTGGCATCGTGCCG 497 >seq9435 Length=520 Score = 179 bits (198), Expect = 8e-41 Identities = 291/419 (69%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 22501 CGATGTTCTCGGCAACAGCAGCGCGGCCGAGGTCTTCGACGACATACGCATCGTTCGACG 22560 ||||||||||| | | || | |||||| ||||||||| || || | ||||| |||| Sbjct 491 CGATGTTCTCGACCAGGGCGCCACGGCCGTAGTCTTCGACCACGTAGTCGTCGTTGGACG 432 Query 22561 ATTCATAGTTCTCGATACGGTCGCGCTTCGCGTTGTCGACGATCGTGCGACGCCGTGCGC 22620 | || ||||| | | |||| || || | |||| || || || || || Sbjct 431 ACTCGAAGTTCGCCACGCGGTTCTTCTGCGGCTGCTCGATGAGGTAACGGCGGCGGCCGT 372 Query 22621 TGTCTTGAAAGTACAGAGACAGATTGTCGAAACTCGTCACCATCACGGCATTGGCCGGGA 22680 | || |||| | ||||||||||| | || ||||||| ||| |||||||||| Sbjct 371 CGATCTGCCAGTAGATCGACAGATTGTCCAGCGAGGTGACCATCAGGGCGTTGGCCGGGA 312 Query 22681 AGAAAGGCACGGTCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTCTGGATCACGTCAG 22740 |||||||||| |||| | | ||||| ||||||||||| || | | | || || | Sbjct 311 CGAAAGGCACGATCACCGGCTGCAGGCCACCGATGCGCTTAGTGCCCAGCACCAGATCCG 252 Query 22741 CGGCCATCATTTCGGTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTCGTGCA 22800 |||||| | ||||||||||| || ||||||||| || ||||| ||||||||||||| Sbjct 251 CGGCCAGCTGCTCGGTCGGCGCCAGGTCCTTGTTGATGATGGGGAAGTACTTGTCGTGCA 192 Query 22801 ACAGGCCGCGACCGCACATCACGACGAGAGCCGTGTCGTCTTGGTGCCACGGGTCGATCA 22860 |||| ||| || || || || | ||| || | ||||||||||| ||||||| Sbjct 191 CCAGGTTGCGGCCCAGGATGACCACCAAGCCCGGATCCTGCTGGTGCCACGGCTCGATCA 132 Query 22861 TGCTCGCGACCAGATCGGCGACGAGCGCATCGAGGTTCGCGTAATCGCCGGCCGCGCCG 22919 | | | |||| ||| || ||||| || ||||| ||||| || || | |||||| Sbjct 131 GGGTGGACACCACATCCATAACCAGCGCGTCCAGGTTGGCGTAGTCCGCGCCGGCGCCG 73 >seq12163 Length=619 Score = 145 bits (160), Expect = 2e-30 Identities = 356/534 (67%), Gaps = 36/534 (7%) Strand=Plus/Minus Query 25470 CAGAGCTATCACGGCAATTTCTATTTCGACGAGTATTTTTGGGTGAGCGGGTTTCGCCAG 25529 ||| |||| ||||| |||||||| |||||||| | || ||| ||| || |||| Sbjct 619 CAGGGCTACCACGGGAATTTCTACTTCGACGAATTCTTCTGGACCTACGGCTTCAACCAG 560 Query 25530 CTCAACAAGGTTGCATCGGGCATGGCGATGCACAAGAAATGGCGAAAGACGTATTTTTCA 25589 || |||||||| || |||||||||||||||||||||||||| ||||| || || Sbjct 559 CTGAACAAGGTCGCCAGCGGCATGGCGATGCACAAGAAATGGCGCAAGACCTACTTCAGC 500 Query 25590 ACGCCGTCGAGCATCACGCACGAGGCTTACACCTTCTGGAGTGGCGAGCACTACAACAGG 25649 ||||| || | ||| ||||||| || ||| ||||||| ||||||| || ||||| | Sbjct 499 ACGCCTTCCACCATGGCGCACGAAGCCTACGATTTCTGGACAGGCGAGCGCTTCAACAAG 440 Query 25650 GGCCGCGCAAAGGCCGA--TCACATTCA--TCTCGAT--ATTTCGCACTCGGC--GCTCG 25701 ||| | ||||| || || || | ||||| || || | |||| ||| | Sbjct 439 GGC-------AAGCCGACCTCCCA-GCAGGTATCGATCGATGTCAGCCACGGCCGGCTGG 388 Query 25702 CTCGCGGCCGGCTCTGCGAGGATCGACA-GTTTCGCCAGATCGTGACGGTCGAGGATGCC 25760 | ||||| | ||||||||| || | | || |||||||| || || || || Sbjct 387 GCAGTGGCCGACGCTGCGAGGA-CGCTATCTGGCGGCAGATCGTCACAGTGCTCGACGCG 329 Query 25761 GTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAATACAGCGCGCAG 25820 | || | | || ||||| |||||||| || ||||||| || Sbjct 328 GCCGACCGAGGGTGCGATCTGTTCGAT----------------GTGGNNACAGCGCCGAG 285 Query 25821 GAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGATACCGCGTCGATCTTTCCGCTC 25880 |||| ||| || ||| ||||||| |||| | ||||| | ||| | || ||||| Sbjct 284 GAATTCGCCAACCTGCTGATGTGCGAGTTCGTGGACGACAGCGCCAGCGTGTTCCCGCT- 226 Query 25881 GCCGA-GCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGACGATTTCAAGCC 25939 | ||| |||||| | ||| ||| ||| |||| || ||||||| ||| |||| || Sbjct 225 GACGATGCTGCAGCCGTGCCAGGTGGACAGCTGGGTGGAGTGGGCCGGCGAGTTCAGCCC 166 Query 25940 GCTCGCGCCCCGCCCTTTCGGGTTCCGGCCGGTATGGGTTGGCTACGATCCAGC 25993 |||| ||||| | || ||| |||| ||| |||| ||||| || || Sbjct 165 CTTCGCCATGCGCCCATATGGCGACCGCGCGGTGTGGATTGGGTACGACCCGGC 112 >seq1269 Length=1066 Score = 125 bits (138), Expect = 1e-24 Identities = 331/500 (66%), Gaps = 29/500 (6%) Strand=Plus/Minus Query 23875 CGGTTTCGTCGGCGACCGTGAAAAGGTTCGTCGGCGATACCTTGCGGCCGGAGAACGGCG 23934 ||||||| | || | | ||| ||||| ||||| ||||||| | |||||| Sbjct 1024 CGGTTTCAGCCGCTTCGGAGAACAGGTTTCCCGGCGCCTGCTTGCGGTCCTTGAACGG-- 967 Query 23935 AGGCGGTC----GGGTTCTGAGCTGCGAAAGAAAGGATTTCGGTGCCGAGGCTCGCGGGG 23990 || ||| ||||||| || | ||| | || || | ||| |||| ||| || || Sbjct 966 --GCTGTCTTCGGGGTTCTTGGCCGAGAAGGCCAGCATGTTGGTTCCGATGCTGGCCGGC 909 Query 23991 CTATCGGTCACGGCGAGGCCGATGAGATACGCCTGTTTCG-TGTCGGCGAATGACGGGTC 24049 ||| |||||| | |||||| || || |||| | || ||||||| ||| |||| | Sbjct 908 GAATCCGTCACGCCCAGGCCGTACAGGTAGGCCT-TGCCGCTGTCGGCAAATTCCGGGGC 850 Query 24050 GATTTCGCACGAGGTGTAAATCTTTTGCTT---CGCCTTCGTCATCGCGACCAGCTCGGC 24106 || ||| |||| | | ||| ||||| | | || ||| ||||||| || || Sbjct 849 AATCTCGATGCTGGTGAAGACCTTCTGCTTGCGCACGTTGACCATGTCGACCAGGTCAGC 790 Query 24107 AGTCGGCTCGATTTGCGCGAACAGTCCGAGCTT------GCCGGCGAATTCGCCCGTGAG 24160 ||||| |||| || |||||||| | | ||| |||||||| |||| | Sbjct 789 GGTCGGGTCGACCTGGGCGAACAGCGCCATCTTCTTCTTGCCGGCGATTTCGAC------ 736 Query 24161 TTCTTGCGTTTCGACCGCGAGCACGTCGCCGTATGCCTTGAACGGGCCATCGGGCACGAT 24220 ||||| | | |||||||| |||||||||||| || |||||||| || |||| Sbjct 735 TTCTTCGGCCTTGACCGCGACCACGTCGCCGTAGGCGCGGAACGGGCTGTCCGGCAGCGC 676 Query 24221 GCCGCGATAGTGTTCGAGGTTCACGCGTGCGCCGTATTTCGTCGGCGAGTAGTTCGCGGC 24280 || ||| ||||| || | | || |||||||| | ||| |||| | | || Sbjct 675 GCTGCGGTAGTGCTCCATCCAGATCCGGGCGCCGTAGACCTCCGGGTCGTAGGTTTCAGC 616 Query 24281 AATCTGTTCGAGCCATGC--GCGCTCGATCACGCGGCCGTCAGTCGTCGCGCCTTCGACG 24338 || | ||| | ||| |||||||||||||||||| || || || ||||||||||| Sbjct 615 CATTTCCACGATC--TGCTGGCGCTCGATCACGCGGCCATCGGTGGTGGCGCCTTCGACA 558 Query 24339 GCGATGCGGAACATCTTGGA 24358 || | ||||| | || ||| Sbjct 557 GCCACACGGAAGAACTGGGA 538 >seq2422 Length=594 Score = 93.3 bits (102), Expect = 9e-15 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 26227 TCAACTATTCGCCCGAAATCAAGGGGCGTCTCGTGCTTAAGGGCTTGTCGGTGATCGGCA 26286 ||| ||| |||||||| | ||| ||| || ||||| |||| || || ||| | Sbjct 553 TCAGCTACTCGCCCGAGGTGAAGACGCGGCTGGTGCTCAAGGCGTTCGATGTCATCAAGA 494 Query 26287 AGGGCCGGCTCGAATTCGATGCCGGTTGGACAGACCTAGCGCAATCCTTCATGGCCATTC 26346 | | || || |||| || ||||| ||||| ||| | | || || | | ||||| | Sbjct 493 ACGAGCGTCTGGAATATGACGCCGGCTGGACCGACATGACCCAGTCGCTGCTTGCCATCC 434 Query 26347 GGAAAACCATGACGGCGAGCGGCCGAAAGGTGACATACGAGGCGAGCCGCAGCGAGGAA- 26405 ||| |||| ||||| ||||||||| || || ||| |||| | ||| || | | Sbjct 433 AGAAGACCAGCACGGCCAGCGGCCGACAGACCACCTACACGGCGGGGCGCT-CGCGCACG 375 Query 26406 ACCGGCCACGCCGATCTAGCGTGGGCGTGCCTGCACGCGCTCGATAACGAGCC 26458 ||||||||||||||||| ||||||||| ||||| || || | ||||| || Sbjct 374 ACCGGCCACGCCGATCTGGCGTGGGCGCTGCTGCATGCCCTGCAGAACGAACC 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103276385612036