Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq2271 228 2e-55 >seq2271 Length=37941 Score = 228 bits (252), Expect = 2e-55 Identities = 336/468 (72%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 30472 CTTATCCGGCCTGAAT-CTGCACAGCTCCCCGGTTTCGTCATCATTCCAGTAGATAGAAG 30530 ||||||||| | |||| | ||||||||| |||||||| ||| |||||||| || | Sbjct 12236 CTTATCCGGGC-GAATGCGGCACAGCTCTCCGGTTTCCGAATCCGTCCAGTAGTGCGACG 12294 Query 30531 ACTCGCAATGCCCGTCTGCCTCCAGCAACCACCGTGCGGCGGGGTGGGATAGAGCACTCT 30590 ||||| || || ||||| || | ||| || || || || |||| | || || | Sbjct 12295 CTTCGCAGAAACCTTCCGCCTCAAGAAGCCAGCGCGCCGCCGGATGGGCCATCGCGCTGT 12354 Query 30591 CTCGCATTAACTTTAGCTTTATGCCTTGCTCTGCATCCATAACCGTCATTCCAGATCTT- 30649 | ||||| | || ||||| ||| || || ||||||||||||||||| || || || Sbjct 12355 CACGCATAAGATTCAGCTTGCGGCCCTGTTCGGCATCCATAACCGTCATGCCC-ATGTTC 12413 Query 30650 TCACAATCCCGGAGAAACCTGGCTTCTTCTTCCTTTCCTGC-GCTGGTCCGCCTGTTTAC 30708 || ||| || ||| ||||| || || ||||| || |||| | || | ||| | Sbjct 12414 TCGACATCTTTCAGGAACGCTGCTTCATCCTCTTTTCCGGCTGCTG-TGCGGCGGTTGAA 12472 Query 30709 GTCTGGCCCCACAACAAAACGCTTATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAG 30768 | ||| |||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 12473 CTGCGGCGCCACGATGAAACGCTTATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAG 12532 Query 30769 GGCAGTACCCATATCCAGCGCTTTCATCTTTTCAGTATCTACTGGCGCGCTTTTTCGCCA 30828 ||| || ||||||||||||||||||| |||||| || || || ||||| ||| |||| Sbjct 12533 GGCGGTGCCCATATCCAGCGCTTTCAGCTTTTCGGTGTCGACCGGCGCTGATTTCTGCCA 12592 Query 30829 CTTATATACTGCCGGGTTTGTAGCTATATCATCGAGCTGGGACTTGCTTACACCTGCCCC 30888 | | |||||| | || | ||| ||||| ||||| || || || | || Sbjct 12593 TTGCAGCAGGGCCGGGCTCAACGCAACCATATCCAGCTGCGACTTACTCACGCCGTCTCC 12652 Query 30889 AGAATGATAATCCTCGTTAGAAATGTCGTAATAAATGCCAGGTTCCAT 30936 || || ||||||||||| |||||| | ||||| || || | ||| Sbjct 12653 GGAGTGGTAATCCTCGTTGCTGATGTCGAAGTAAATTCCTGGCTTCAT 12700 Score = 125 bits (138), Expect = 2e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 29850 ACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGTGTTTTTTGA 29909 || ||||| || ||||| |||||||| || | |||||||| || | |||||||| || Sbjct 11626 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 11685 Query 29910 GCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCAGGCAATCA 29969 ||||| ||||| || ||||| ||||||||||| ||||| | | || |||||||| ||| Sbjct 11686 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 11745 Query 29970 GCAGGCTTCCCGGCGAGGTGGGCGGGTACTGT 30001 |||||||| || || ||||| || || || || Sbjct 11746 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGT 11777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151147177195644