Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq444 176 1e-38 seq1158 170 4e-37 seq60 158 3e-33 >seq444 Length=38654 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||||||||| ||||| || |||||||||| ||||| | ||||| || Sbjct 5026 AACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTC 4967 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || ||||| || ||||||||||| || ||||| || || |||||||| Sbjct 4966 AAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTG 4907 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| || || || |||| || || || | ||||| ||||| Sbjct 4906 GATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTT 4847 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTT 195152 ||||||| |||||| || || | ||||||| || ||| || Sbjct 4846 GCCTGTCAGAGTTTTAACAAAGATTTGCATTGTTGTTTAATT 4805 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| ||||| || ||||| || | |||||| | ||||| ||| Sbjct 5253 ACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCG 5194 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || ||||||||||| || || || ||||| |||||||| Sbjct 5193 AGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 5134 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| |||| || || ||||| || | ||||| Sbjct 5133 ATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTA 5074 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 5073 CCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||||||||| ||||| || ||||| || | ||| || | ||||| || Sbjct 5710 AACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTC 5651 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || ||||| || ||||||||||| || || || || || |||||||| Sbjct 5650 AAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTG 5591 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| |||||||||||||| |||| || || || || || | ||||| Sbjct 5590 AATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTT 5531 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | |||||| Sbjct 5530 ACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || |||||||| ||||| || |||||||||| ||||| | ||||| || Sbjct 5482 AACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTC 5423 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || ||||| || ||||||||||| || || || || || |||||||| Sbjct 5422 AAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTG 5363 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| || || || |||| ||| || |||||||| | ||||| Sbjct 5362 GATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTCTT 5303 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 5302 ACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 >seq1158 Length=25781 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| |||||||||||||| |||| ||||| | ||||| ||| Sbjct 9499 ACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCG 9558 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | ||||||||||| || ||||| || || ||||||||| Sbjct 9559 AGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGA 9618 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| |||| || || || || || | ||||| Sbjct 9619 ATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTA 9678 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 9679 CCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| ||||| || ||||| |||| ||| || | || || || Sbjct 9043 ACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCCTCA 9102 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || |||||||| || ||||| || |||||||| || || || || || || ||||||||| Sbjct 9103 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTCTTGA 9162 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| ||||| || |||| || || |||||||| | ||||| Sbjct 9163 ATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTA 9222 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | |||||| Sbjct 9223 CCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| |||||||| |||||||||| ||||| | ||||| ||||| || Sbjct 9276 GTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCCTCGAGTTG 9335 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || |||||||| || || || || || || || |||||||| || Sbjct 9336 CTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGAATCTT 9395 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || |||| || || || | ||||| ||||| || || Sbjct 9396 GGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCTTACCAGT 9455 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 9456 GAGGGTCTTGACGAAAATCTGCAT 9479 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||||||||| ||||| || ||||| |||| ||| || | ||||| || Sbjct 9726 AACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTC 9785 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || ||||| || ||||||||||| || || || || || || ||||| Sbjct 9786 AAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCTTG 9845 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| ||||| || |||| || || || | ||| | ||||| Sbjct 9846 GATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTT 9905 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || ||||| || | |||||| Sbjct 9906 GCCAGTCAGTGTCTTTACAAAGATTTGCAT 9935 >seq60 Length=27343 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || || ||||| ||||| || ||||| || | ||| || | ||||| || Sbjct 11532 AACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTC 11591 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| ||||||||||| ||||||||||| || || || || || |||||||| Sbjct 11592 AAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTG 11651 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| |||||||| || | || || || || || | ||||| Sbjct 11652 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTCTT 11711 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||| || || ||||| | ||||| Sbjct 11712 TCCTGTCAATGTCTTAACGAAGATCTGCAT 11741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109291371751994