Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq60 100 2e-16 seq444 95.1 8e-15 seq1158 86.0 4e-12 >seq60 Length=27343 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || || || || ||||| |||||||||||| | || |||| || Sbjct 11532 AACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTC 11591 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || ||||| || || || ||||| ||||| | || | ||||||||||| Sbjct 11592 AAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTG 11651 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | ||| | |||| || |||| || ||||| || Sbjct 11652 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTCTT 11711 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||||| || ||||||||||| Sbjct 11712 TCCTGTCAATGTCTTAACGAAGATCTGCAT 11741 >seq444 Length=38654 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || || || ||||| ||||| |||||| | || |||| || Sbjct 5710 AACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTC 5651 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || || ||||| ||||| | || | ||||||||||| Sbjct 5650 AAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTG 5591 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| ||||| || || || | ||| |||| || |||| || ||||| Sbjct 5590 AATCTTGGTCTTGAC--ATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTC 5533 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||||| || ||||| |||||| Sbjct 5532 TTACCAGTCAAGGTCTTGACGAAGATTTGCATA 5500 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || || || ||||| || || || || | || |||| || Sbjct 5026 AACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTC 4967 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || |||||||| || || ||||| ||||| | || | ||||||||||| Sbjct 4966 AAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTG 4907 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT-TCACCGG---CCTCAACATCGACGGTTATGG 34947 ||||| ||||| | | ||||| | ||| |||| || || | ||| || | Sbjct 4906 GATCTTGGTCTTGAC----GTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAG 4851 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||| || |||||||| ||||| Sbjct 4850 TCTTGCCTGTCAGAGTTTTAACAAAGATTTGCAT 4817 >seq1158 Length=25781 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| |||||| | || | || || || || || || ||||| Sbjct 9061 TCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAG 9120 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || || | || | ||||||||||| |||||| |||||| Sbjct 9121 ATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTC 9180 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||||| || | ||| ||||| || || || | ||||| ||| Sbjct 9181 TCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACA 9240 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 9241 AAGATTTGCATA 9252 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| || ||||| || || | || |||| || ||||| || || || || Sbjct 9517 TCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAG 9576 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | ||||||||||| |||||| |||||| Sbjct 9577 ATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTC 9636 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||||| |||| || ||||| || || ||||| ||||| ||| Sbjct 9637 TCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACA 9696 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 9697 AAAATTTGCATA 9708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324580654491696