Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq617 176 4e-38 seq53 147 2e-29 seq149 120 2e-21 seq1675 107 2e-17 seq150 93.3 3e-13 >seq617 Length=59612 Score = 176 bits (194), Expect = 4e-38 Identities = 349/509 (69%), Gaps = 6/509 (1%) Strand=Plus/Minus Query 550031 GGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACT 550090 || || |||||||||| | || || |||||||| |||||||||||||| ||||| || Sbjct 29217 GGAGTATGGCAAAATGATCGTGTAGAGATTATTGCTAATGATCAAGGTAATAGAACAACA 29158 Query 550091 CCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA 550150 ||| |||||| | || || || || || | | | |||| ||||| ||||| ||||| Sbjct 29157 CCAAGTTATGTGGCCTTTACAGATACAGAGCGTCTCATTGGAGATGCTGCAAAGAATCAA 29098 Query 550151 GCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTT 550209 | || || ||||| |||||| | |||||||| || ||| | || || | |||||| Sbjct 29097 GTGGCTATGAACCCTACAAATACTGTCTTTGATGCAAAGCGTCTTATCGGCCGTAAGTTT 29038 Query 550210 TAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC 550269 | | ||| || || | ||||||||||||||||| ||| | | ||| | Sbjct 29037 TCA-GATCATGTCGTCCAATCTGATATGAAGCATTGGCCATTCAAGGTCGTTGACAAGGG 28979 Query 550270 TGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTC-ACCAGAAC 550328 | || || || | || || | |||| | | || | || | ||| ||| Sbjct 28978 AGACAAGCCACTCATCG-AGGTAGAGTTCAAGGGTGAGAAGAAGACCTTCCAACCCGAAG 28920 Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 | || || || ||||| || | || ||||| | |||||| | | ||| |||| ||| Sbjct 28919 AGATCTCTTCGATGGTGTTGACAAAGATGAAGGAGACAGCC-GAGTCTTTCTTGGGTAAG 28861 Query 550389 A-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 | | | |||| || || || || ||||| || ||||| ||||| || |||||||| Sbjct 28860 ACCATCAACAATGCCGTCATTACAGTTCCAGCCTACTTTAACGACTCTCAGCGTCAAGCC 28801 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || || |||||||| |||||| ||| || || | ||||| ||||| ||||| ||| Sbjct 28800 ACCAAGGATGCTGGTGTTATTGCCAAACTCAACGTCCAACGTATCATCAACGAACCAACT 28741 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| || |||| ||||| ||||| || Sbjct 28740 GCTGCAGCTATTGCCTATGGTCTTGAGAA 28712 Score = 122 bits (134), Expect = 7e-22 Identities = 256/382 (67%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 |||| |||||||||||||||||||| ||||| || | ||||| ||||||||||| Sbjct 28184 TTAACCCAGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGCTGCTATTCTTTCAAACG 28125 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | || || || | | || | | ||| | ||||| |||| | || || || Sbjct 28124 AGGGTGGTGCCAAGGTTGCAGATCTCTTGCTTCTTGATGTCGCTCCATTGTCACTCGGAC 28065 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || || | ||| ||| | ||||| || | || | || ||||||||||| || | Sbjct 28064 TCGAGACTGCTGGTGGTGTCATGACCAACTTGATTCCACGTAACACTACTATTCCATGCA 28005 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | || |||| || || || || || || ||||| ||| | | || || || | | Sbjct 28004 AGAAGTCTCAAGTCTTCTCCACCTACTCTGATAACCAACCAGGAGTACTTATCCAGGTAT 27945 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 | || || || | | || || || || ||| || | ||| | | | Sbjct 27944 TCGAGGGTGAGCGTGGTATGACCCGTGACAACCATTTACTCGGCAAGTTTGAGCTCTCTG 27885 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 |||| || |||||||| |||||||| || || || || |||||||||||||||||||||| Sbjct 27884 GTATCCCACCTGCTCCACGTGGAGTTCCTCAGATCGAGGTTACTTTCGATATCGATGCCA 27825 Query 552568 ATGGAATTTTGAATGTGACTGC 552589 | || || |||||||| |||| Sbjct 27824 ACGGTATCTTGAATGTCTCTGC 27803 >seq53 Length=825717 Score = 147 bits (162), Expect = 2e-29 Identities = 157/207 (76%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||||| |||| || | | | | |||||| ||| || || ||||| || || Sbjct 738075 AAAATGAAAAAAACTGCTGAAGACTATTTAGGTCAAACAGTAACTGAGGCAGTTATTACA 738134 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || || || ||||| || | |||||||| ||||||||||| |||||| || ||| Sbjct 738135 GTTCCTGCTTACTTTAACGATGCTCAACGTCAGGCTACTAAAGAAGCTGGAGAAATCGCT 738194 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||||| ||| | ||||| |||||||| || ||||||||||||||||| |||||| | Sbjct 738195 GGTCTTAAAGTTATGCGTATCATCAATGAGCCAACTGCTGCTGCACTTGCTTATGGATTA 738254 Query 550532 GATAAACA---TAATGATCAAGAACTT 550555 |||||| | ||||||||| || || Sbjct 738255 GATAAAAAAGGAAATGATCAAAAAATT 738281 Score = 138 bits (152), Expect = 9e-27 Identities = 268/392 (68%), Gaps = 18/392 (5%) Strand=Plus/Plus Query 552186 GGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATT 552245 ||||||||| | || ||||||| || ||||||| |||||| ||| || || ||| Sbjct 738771 GGTAAAAAAGCTTCTAAAGGTGTTAACCCTGATGAGGTTGTTGCTATTGGAGCTGCTATT 738830 Query 552246 CAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGT-ACTTGTAGA 552304 |||| | || | |||||| |||| |||| | |||||| ||||| | Sbjct 738831 CAAGGTGGAGTTTTATCTGGA------GATGTAAAAG----ATGTATTGTTACTTG---A 738877 Query 552305 TGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGA 552364 || |||||||| ||| | ||| | ||||| | || ||| | ||||||| | ||||| Sbjct 738878 CGTAACTCCTCTTTCTTTAGGTATCGAAACTATGGGTGGTGTATTGACTAAATTAATCGA 738937 Query 552365 TAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCA 552424 || || ||||| || ||||||||||| ||||| ||||| | | ||| ||| Sbjct 738938 GTCTAACACAACTATCCCAACTAAAAAATCTCAAGTATTCTCTACTGCTGCTGATTCTCA 738997 Query 552425 AACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCA 552484 | | ||||| ||| || | || ||||||||||| | || ||||| || | Sbjct 738998 ACCATCTGTTGAAATCCACGTATTACAAGGAGAAAGAGCGATGGCTGCTGATAACAA--A 739055 Query 552485 AC--TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || | ||| ||| | ||||| ||||| || || || || | ||||| || ||||| Sbjct 739056 ACTATCGGTCGTTTCCACTTAGACGGTATCCCGCCAGCACCAAGAGGAGTTCCTCAAATC 739115 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 ||||||||||||||||| ||||| || || || Sbjct 739116 GAAGTTACTTTCGATATTGATGCTAACGGTAT 739147 >seq149 Length=52016 Score = 120 bits (132), Expect = 2e-21 Identities = 370/555 (67%), Gaps = 23/555 (4%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||||| ||||| || || |||||||| || |||||||| | | ||| Sbjct 21701 ATTGGTATCGATTTGGGAACTACTTACTCCTGTGTTGGAGTATGGCAAAACGATCGTGTT 21760 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || ||||| ||||| |||||| | || || || || || || | |||| || Sbjct 21761 GAGATCATTGCTAATGACATGGGTAACCGTACCACCCCCTCATACGTCGCCTTCAACGAC 21820 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 | ||| | | | |||||||||| || || | |||| ||| || || || ||||| Sbjct 21821 AGTGAGCGTCTCATTGGTGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCAACCAAC 21877 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGAC--TGTTCAG 550228 || ||||| |||||||| ||| | ||||| | ||||| | ||| | || |||||| Sbjct 21878 ACCATTTTCGATGCTAAGCGTCTTATTGGTCGTAAGTTCTC-TGA--CCACGTTGTTCAA 21934 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGT---TAATGTTTCTGGAAAACCTTATATT 550285 || ||||||||||| ||||| ||| | | || || | || || || || | Sbjct 21935 GCCGATATGAAGCACTGGCCATTCAAGGTCGTCCAAAAGGAGGGTGACAAGCCATACTTG 21994 Query 550286 GAAG-CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGG 550343 ||| | | | |||| | | || | || |||||||| | |||||||| |||| Sbjct 21995 CAAGTCGAGT--ACAAGGGTGAGACCAAGACCTTCTCACCAGAGGAGATTTCATCCATGG 22052 Query 550344 TTTTAATGAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGC 550401 | | |||| ||||| | || || ||| | | ||| |||| || | | || Sbjct 22053 TCCTCTTGAAGATGAAGGAGACTGCTGAGT-CCCACCTCGGT-AAGACCGTCAGCAACGC 22110 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || || || || || || || || || ||||| ||||||||||| || || || ||||| Sbjct 22111 CGTCATCACCGTCCCTGCCTACTTCAACGACTCCCAACGTCAAGCCACCAAGGACGCTGG 22170 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 ||||| || | || | ||||| ||||| || || |||||||| || |||| Sbjct 22171 TGTCATTGCCAAGCTCACCGTCCAACGTATCATCAACGAGCCCACTGCTGCCGCCATTGC 22230 Query 550522 ATATGGACTTGATAA 550536 || || || || || Sbjct 22231 CTACGGTCTCGAGAA 22245 >seq1675 Length=53132 Score = 107 bits (118), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 550314 AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG 550373 ||| | | ||| || | ||||| | ||| || | |||||||||| |||| ||| | Sbjct 13440 AATATACTCCACAAGAGATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAG 13499 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 ||| | ||||| ||||| || || || || || || || || || ||||| |||||| Sbjct 13500 ACTTTTTAGGTCAGGAAGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACG 13559 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 |||||||||| ||||| ||||| ||||| ||||| || | | ||| | || | Sbjct 13560 CACAACGTCAGGCTACAAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCA 13619 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | || ||||||||||| || || | || ||||| | |||||| Sbjct 13620 TTAACGAACCTACTGCAGCGGCTTTAGCCTATGGTTTGGATAAA 13663 Score = 104 bits (114), Expect = 2e-16 Identities = 262/395 (66%), Gaps = 24/395 (6%) Strand=Plus/Plus Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || |||| || || ||||||| |||||| |||||| |||||||| | | | | | Sbjct 14190 AAGGTGTAAACCCTGATGAGGTTGTTGCAATTGGTGCTGCAATTCAGGGTGGTGTATT-- 14247 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 |||| | |||| || || | || || | | |||||||| || || || Sbjct 14248 ---GACA----GGTGAAG---TAAAAGACGTTTTATTATTGGATGTTACCCCGCTTTCAT 14297 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | || || | || ||| | ||||| || || || || ||||| ||||||| Sbjct 14298 TAGGTATTGAGACCATGGGTGGTGTGATGACAAAACTGATTGAAGCCAATACAACTATTC 14357 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 ||| ||||||| | || ||||| | | || ||||| || | || ||| | Sbjct 14358 CTTCTAAAAAAGCAGAAACTTTCTCTACTGCTGCTGACAATCAGCCTTCAGTAGAAATCC 14417 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAA---AGATAATAATCA-ACT--TGGTACTT 552495 | ||||| | |||||| | | ||| || | | || | ||| ||| || Sbjct 14418 ATATTTTACAGGGAGAACG------CCCTATGGCAGCTCAAAACCGTACTATTGGACGTT 14471 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 ||| |||||| |||||||| || || |||||||| || || |||||||||||| | || | Sbjct 14472 TTATTTTAGATGGTATTCCACCAGCACCTCGTGGTGTTCCTCAAATTGAAGTTGCATTTG 14531 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||| |||||||| || || || |||| | |||| Sbjct 14532 ATATTGATGCCAACGGTATCCTGCATGTAAGTGCT 14566 >seq150 Length=14714 Score = 93.3 bits (102), Expect = 3e-13 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | || ||||| || || |||||| | | | || || || Sbjct 5434 ATTGGTATCGATCTCGGTACCACTTACTCATGCGTTGGTATCTTCAAGAACGGACGTGTA 5375 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||| |||| || ||||||||| | | ||||| || || ||| | ||||| || Sbjct 5374 GAGATTATCCCCAACGAGCAAGGTAACCGTATCACTCCTTCCTACGTTGCATTCACAGAC 5315 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | | | ||||||| || || || ||||||||||| ||| || ||||| Sbjct 5314 ACTGAGCGTCTCATTGGTGACGCTGCCAAGAATCAAGCCACTCTTAACCCAGAGAATACC 5255 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 || |||||| ||| ||| | ||||| |||| Sbjct 5254 ATCTTTGATATTAAGCGTCTTATTGGTAGAA 5224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028588299487180