Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq4011 201 4e-47 seq4422 147 7e-31 seq2271 113 1e-20 >seq4011 Length=1784 Score = 201 bits (222), Expect = 4e-47 Identities = 262/362 (72%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 39215 AACACCGACTGGGCTTATGGGGTGATTCGATGAAATCTCTTGCAGAGCAGATGCGTAACC 39274 ||||| |||||| ||| |||||| | |||||| | || | |||||| |||| Sbjct 788 AACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACT 729 Query 39275 ACGACCGCGAGCAGATGAGCCGCATGGCCCATAACCTGCCAGAGCAGTACCAGGAGCGTG 39334 ||||| ||||||||| | || || ||| | ||| |||| || |||||| | || Sbjct 728 TTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGC 669 Query 39335 CGCCGGTCGAACAAGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCTT 39394 ||| ||| |||| || |||||| | ||||| |||||| | || | | || ||| Sbjct 668 CGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTT 609 Query 39395 TCCCGGCCAGTATGGCAAACTTCCGCACCCAGGATGACCTGAACGAATTCCGCCGTCAGT 39454 ||||||| || |||| ||| || |||| |||| ||||||||| ||||||| |||| Sbjct 608 TCCCGGCGAGCCTGGCTAAC---CGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGT 552 Query 39455 GGCTGCTGGCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGC 39514 || | ||||| || | ||| ||||||||| ||| |||| ||||| | || || |||| Sbjct 551 GGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGC 492 Query 39515 GTGTAGCTCGCCGCCAGGAGCGTCCATTCCTGCCGTCTCCGGGCCAGTTCGTCGCCTGGT 39574 | ||||| || || ||| | || ||||||||||| || || || ||||| |||||||||| Sbjct 491 GCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGT 432 Query 39575 GC 39576 || Sbjct 431 GC 430 >seq4422 Length=2403 Score = 147 bits (162), Expect = 7e-31 Identities = 148/188 (79%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 42240 TTTGATTTTCTGGAATCAAACCGCCATAATCATGTCATCGGAGCCTGAACAACTCCGGTG 42299 |||||||||| |||||| | |||||| | |||| ||||| ||||| |||||||| Sbjct 2067 TTTGATTTTCAATAATCAACTTGTCATAATTAAGTCACCGGAGTTTGAACTCCTCCGGTG 2126 Query 42300 ACTTCTGCGCATTTAAGGGGACTTAAATGCGACCA--CAATCTGAACTCC--TCACCTTG 42355 |||||||||| | | |||||| | ||||| || ||||| ||||| || || | Sbjct 2127 ACTTCTGCGC-TAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCT- 2184 Query 42356 TCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGTTTGACCTCTTCGGAGGT 42415 ||||||||||||||||||||||||||| | ||||| | |||||||| |||| ||||||| Sbjct 2185 TCACAGATGCAGAAATGCACCTGCGATATCTTGCATCCAGCGTTTGATCTCTGCGGAGGT 2244 Query 42416 GAAGCGTG 42423 |||||||| Sbjct 2245 GAAGCGTG 2252 >seq2271 Length=37941 Score = 113 bits (124), Expect = 1e-20 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 46196 AAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGGAAATATCGCGGTCGCGGCCTGA 46255 ||||||| |||| ||| | | | | ||| |||||| || | ||| ||||| || | Sbjct 7132 AAAAGAA--TGGGGAACAACGGTCCGACTGACGGCTGGTTTTACCTCGGGCGCGGGCTTA 7189 Query 46256 AGCAAATCACCGGGCTCAGCAATTACCGCAACTGTGGCCACGCGCTGAAGTTGGACCTTG 46315 || ||||||||||| | ||| || ||| |||| ||| | | |||||| |||| || | Sbjct 7190 TCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAGGTGGATCTGG 7249 Query 46316 TAACCCAGCCTGAATTGCTGGAACAGGATGAATATGCTGCGCGCTCCGCTGCATGGTTCT 46375 | | |||||||| |||||| ||||| ||||| || || ||| ||| || ||||||| Sbjct 7250 TTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCGGCGTGGTTCT 7309 Query 46376 ATGTCTCGCACGGATGCCTGCTCCATTCCGGCGACGTGGAGCGCGTGACGCTGCTTATCA 46435 | | | || ||| || | |||||||| ||| |||||| |||| | | |||| Sbjct 7310 TCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACGCAGATCATCA 7369 Query 46436 ACGGCGGCCGTAACGG 46451 | || || | ||||| Sbjct 7370 ATGGTGGGCAGAACGG 7385 Score = 91.5 bits (100), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 45898 GCGGCAGGTATAAGCGCCGGTCTAGCCGTGCGCTGGTTTCACTATATCGATGCTGCAATG 45957 || || ||||| || | | || ||| |||||||| || ||||| || |||||| Sbjct 6835 GCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATATCACCGCGGCAATG 6894 Query 45958 AAGGAATTCGGCAT--AACCGCGCCGCTCGATCAGGCCATGTTTATCGCGCAGATGGGCC 46015 || || || ||||| ||| | |||| | ||||| ||||||||||||||| | || | Sbjct 6895 AAAGAGTTTGGCATCGAACAAC--CGCTGCACCAGGCGATGTTTATCGCGCAGGTCGGGC 6952 Query 46016 ACGAGTCCGGCGGCTTCACCCGGCTGGTGGAAAACCTGAACTA 46058 | ||||| |||||| ||||||||| ||||||| | ||||| Sbjct 6953 ATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTA 6995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158496409134392