Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq5294 145 3e-30 seq5955 104 8e-18 seq1087 96.9 1e-15 seq12630 89.7 2e-13 >seq5294 Length=478 Score = 145 bits (160), Expect = 3e-30 Identities = 157/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||| | ||||||||||||| ||| | ||||| |||||||||| Sbjct 241 ACGGCAAGCTCAGCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGT 300 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTT--CGCGGACCAGCTCGGACTGAA 24937 |||| ||||| |||||||| ||||| ||||| | | ||| | ||| ||| ||| Sbjct 301 TCAACATCGCCAGCTACGCACTGCTCACCCACATGGTGGCGCAGGCCA--CCGGGCTGGG 358 Query 24938 GGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997 || ||||| ||| | ||| ||||||| || ||||| || |||||||| || || Sbjct 359 CGTGGGCGACTTCGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCACGTTGACCA 418 Query 24998 GGCGACCGAACAACTGTCGCGCACGC 25023 |||| ||| || ||||||||||||| Sbjct 419 GGCGCGCGAGCAGCTGTCGCGCACGC 444 >seq5955 Length=632 Score = 104 bits (114), Expect = 8e-18 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| || ||||| || ||||||||||| ||| | |||||||| ||||||| Sbjct 358 ACGGCAAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGT 299 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||| |||||||| | |||| | ||| | || || || Sbjct 298 TCAACATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGC 239 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||| || ||| ||||||| ||||| ||| |||| | || || |||||||| |||| Sbjct 238 CCGGAGACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGG 179 >seq1087 Length=202632 Score = 96.9 bits (106), Expect = 1e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||||||||| ||||||||||||||||||| ||| || | || ||||||||||||| Sbjct 83491 ACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGT 83432 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGA 24936 |||||||||| ||| || |||||||||| || | | || ||| || || ||| Sbjct 83431 TCAATATCGCATCCTATGCCCTGCTGACCC---TCATGGTGGCGCAGGTCACGGGTCTGC 83375 Query 24937 AGGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGC 24996 || || || ||| | || ||||| | || || ||| | ||||| |||||| Sbjct 83374 AGCCGGGTGATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGC 83315 Query 24997 AGGCG 25001 ||||| Sbjct 83314 AGGCG 83310 >seq12630 Length=277 Score = 89.7 bits (98), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 26257 CACGACTGGTCCGGAGTCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGC 26316 ||| ||||| ||| ||||| || |||||| || |||||| |||||||||||| Sbjct 151 CACAACTGGGACGGCGTCGCACAGTGCGAGAGCGGTGGCGACTGGAACATCAACACCGGA 92 Query 26317 AACGGGTTCTACGGCGGCCTGCAGTTCACGCAGTCCACCTGG 26358 ||||| | ||||||||||||||||||| ||||| ||||||| Sbjct 91 AACGGCTACTACGGCGGCCTGCAGTTCTCGCAGAGCACCTGG 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164146711095136