Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq11800 129 2e-25 seq10729 113 1e-20 seq11475 96.9 1e-15 seq287 91.5 5e-14 >seq11800 Length=371 Score = 129 bits (142), Expect = 2e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21314 CCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCG 21373 || ||||||| |||||| |||||||||||||| ||||| ||| | ||||||| ||| Sbjct 154 CCGGTGATCGCGCTGTCCCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCG 95 Query 21374 ATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTC 21433 ||||| | ||||| ||||| ||||| || |||||||||||||| || ||||| ||||| Sbjct 94 GTGATGGCCGACCTTCGCGAATCCGGCGCTATCGAGCAGGACGCGGACATGATCGTGTTC 35 Query 21434 GTGTACCGCGACGA 21447 | ||||||||||| Sbjct 34 ATCTACCGCGACGA 21 >seq10729 Length=418 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||| || ||||||||||| ||||||| ||||| || ||||| || Sbjct 265 CCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGACGGCCAAATAAGCGTCC 206 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | | |||||||| || ||| ||||| || |||||||| || |||| ||||| Sbjct 205 GATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGACGCGGACCTGATTATGTT 146 Query 21433 CGTGTACCGCGACGAGGTCTACCACCC 21459 ||| ||||| |||||||| |||||||| Sbjct 145 CGTCTACCGGGACGAGGTGTACCACCC 119 >seq11475 Length=475 Score = 96.9 bits (106), Expect = 1e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13621 GCTGGTAGATCTCGGAGCGGTGGATGGCGACGTCGTCCGGGGCGGTGATGCCGAGGCGCA 13680 ||||||| ||||| |||||| | ||| ||||| | ||| || ||||| |||| |||| Sbjct 321 GCTGGTAAATCTCTTCGCGGTGCACGGCCACGTCCTTCGGAGCAGTGATACCGATACGCA 380 Query 13681 CCTGGTCGCCTTGGCTGCTGAGGACCGTGACGGTGATGTTGTCGCCGATATGCAGGGTTT 13740 |||||| ||| | | || ||| || || ||| ||| ||| ||||| |||||||| Sbjct 381 CCTGGTTGCCCTTGACGCCGAGCACGGTCACGCTGACCGAGTCACCGATCATCAGGGTTT 440 Query 13741 CGCCGGGGCGGCGGGTCAAGATCAGCAT 13768 |||| |||||| |||| ||||| ||| Sbjct 441 CGCCTACGCGGCGAGTCAGGATCAACAT 468 >seq287 Length=224423 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 21320 ATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGA-ACAAGCGACCGATGAT 21378 |||| |||||| |||||| ||| |||| ||| || | ||||||| ||| | | Sbjct 66985 ATCGCGCTGTCACAGCTCTCCCGTCAGGTGGAA-AGCCGCGAAGACAAGCGCCCGCAGCT 67043 Query 21379 GTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTA 21438 || |||||||| || |||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 67044 CTCCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTA 67103 Query 21439 CCGCGACGA 21447 |||||||| Sbjct 67104 TCGCGACGA 67112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157085433389948