Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_016770.1 Length=47159 Score E Sequences producing significant alignments: (Bits) Value seq93 114 4e-21 seq1310 102 2e-17 >seq93 Length=584700 Score = 114 bits (126), Expect = 4e-21 Identities = 219/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 3218 TTCTTTTTCATTCATACCGCAACCTCTCCCTTTATAGCCGGATGGCAGTTATAATTTACT 3277 || ||| | ||| |||| ||||| ||| |||||||| ||||| | |||| ||| Sbjct 272099 TTTTTTATAATTTATACAGCAACACTTCCTTTTATAGCTGGATGCGGATCGTAATCTACG 272158 Query 3278 ATCTTAATATCTTCATACTTAAAATCGAATATATTACGAACATTCGGGTTTAATTCCAAT 3337 | ||| ||||||||| | |||||| || || || || | || || || || | Sbjct 272159 AGAGTAAAATCTTCATAATCAAAATCAAAAATGTTTTTAATCTCAGGATTCAAAATCATT 272218 Query 3338 TTGGGAAGGGCGAACGGCTCTCTACTCAATTGTTCTTTCACCTGTTCAACGTGATTCAAA 3397 || || | | || || | | ||||| || | |||||||| ||||| Sbjct 272219 TTTGGTAATGGTTTTGGTTCACGCGTTAATTGCAGTTCTAACTGTTCAAAATGATTGTTG 272278 Query 3398 TATATATGTCCGTCCCCGATAGTGTGAATGAATCTACGAGGCTTTAAGCCGCAAACCTGC 3457 || || ||| |||| || | ||||||||| ||| || |||| ||| |||||||||| Sbjct 272279 TAAATGTGTGCGTCGCCAAAAGTGTGAATAAATTCACCCGGCTCTAAATCGCAAACCTGA 272338 Query 3458 GCTACCATAGACAGCAAGATA--GAATAAGACGCAATGTTGAAAGGAACGCCTAAAAATA 3515 || | ||| | || || ||| | |||||| ||||| || |||||||| |||||||||| Sbjct 272339 GCAATCATC-ATAGTAA-ATAAGGCATAAGAAGCAATATTAAAAGGAACTCCTAAAAATA 272396 Query 3516 GGTCTGCACTTCTTTGATA 3534 || ||||||||||| || Sbjct 272397 TATCGGCACTTCTTTGGTA 272415 Score = 111 bits (122), Expect = 5e-20 Identities = 214/310 (69%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 3724 CCAGTCACGCCATTGTTTACCGTATATACGTCCAAGATCACCGGAAGGCTTTGCCCATTC 3783 ||| | ||||||||| | ||||| | | |||| | ||| || || | |||||||| Sbjct 272659 CCAATTACGCCATTGATGTCCGTAAACAGGTCCTAAATCGCCATTAGAATCAGCCCATTC 272718 Query 3784 GTCCCAAATATGAACACCACTTTCATTTAGGTATTTTATATTGGTGTCTCCTTTTAACAT 3843 |||||| || | ||| ||| |||| || || ||||| ||||| || ||||||||||| | Sbjct 272719 GTCCCAGATTTTAACTCCATTTTCCTTAAGATATTTAATATTTGTATCTCCTTTTAAAAA 272778 Query 3844 CCAAAGAAGCTCATATATAATTCCCTTCGTGAAT--ACCTTCTTAGTTGTGACAAGCGGG 3901 |||||| | || || || || | | | ||| | || || || || || | ||| Sbjct 272779 CCAAAGCAATTCGTAGATGAT--CGATTTTAAATGGAGTTTTTTTGTCGTAACCATTGGG 272836 Query 3902 AAACCGTCACGCAAATCATAA--GATCGTTGTAAACCGAATAAGCTAATAGTTCCCGTTC 3959 ||||| |||| |||||| || ||| || | || || | || | ||||| |||| Sbjct 272837 AAACCTTCACTTAAATCAAAACGCATC--TGGTAGCCAAAAACACTTTTCGTTCCTGTTC 272894 Query 3960 CTGTTCGATCTGATCTCTTT--TCACCATAATTTAAAGTCTCTTTTAGTAAGTCTAAATA 4017 ||||||| || | || ||| | || | | |||| | ||||| ||| ||||| || Sbjct 272895 CTGTTCGGTC--ACCTTTTTGATTGCCGTTTTCTAAAACGTATTTTACTAAATCTAAGTA 272952 Query 4018 TTGTTCCATT 4027 ||||| |||| Sbjct 272953 TTGTTTCATT 272962 >seq1310 Length=146132 Score = 102 bits (112), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 3446 CCGCAAACCTGCGCTACCAT---AGACAGCAAGATAGAATAAGACGCAATGTTGAAAGGA 3502 ||||||||||| || ||||| || ||| ||| | ||| || |||||||| ||||| Sbjct 105278 CCGCAAACCTGTGCAACCATCATAGTCAGTAAG---GCATAGGAGGCAATGTTAAAAGGT 105222 Query 3503 ACGCCTAAAAATAGGTCTGCACTTCTTTGATACAGTTTCAAATCCAAATAACCGGACTCA 3562 || || | ||| | |||||||||| ||||| || | | || | ||| ||| Sbjct 105221 ACCCCCAGAAAAATATCTGCACTTCGCTGATAAAGCTGACAGCTCAGTTTTCCG---TCA 105165 Query 3563 GACACATAGAACTGAAAAAAGCAGTGGCACGGAGGAAGTGCCATCATG-TGTATTTCTCC 3621 | ||||| ||||| |||||| ||||| || ||||||||||| ||| | ||| ||| | Sbjct 105164 GCTACATAAAACTGGAAAAAGGCATGGCAGGGTGGAAGTGCCAT-ATGTTCTATCTCTGC 105106 Query 3622 AACATTCCAAGCACTAACAATTAACCTTCTTGA 3654 |||||||| ||| ||||| | |||||| || Sbjct 105105 CACATTCCAGGCAGACACAATAATCCTTCTGGA 105073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150763238217564