Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq232 215 6e-51 seq2491 181 1e-40 seq2141 114 2e-20 seq77 96.9 4e-15 seq915 82.4 9e-11 >seq232 Length=384298 Score = 215 bits (238), Expect = 6e-51 Identities = 625/949 (66%), Gaps = 31/949 (3%) Strand=Plus/Minus Query 36828 TAAAAATCTTCATCTAACGTAAATTTTATT----TCCTTATTACTATTCATAACTCCCAT 36883 ||||||||| |||| || | ||||||| | || | | | | ||||| || || Sbjct 339550 TAAAAATCTGCATCGAATG-AAATTTTTTGAGCATCGCTGTCATTGTTCATCACACCTGA 339492 Query 36884 TTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 |||||||| ||| |||| ||| |||| || ||||| || ||||| | ||||| || | Sbjct 339491 CTTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCAT 339432 Query 36944 TTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAG 37003 ||||| ||||| |||||||| | || || | | ||| ||||| | Sbjct 339431 ATCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAGCCCAATTCTACTAA 339372 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 | ||||| ||||| || |||| || | ||| || || ||| |||||||||| Sbjct 339371 TAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTAA 339312 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 |||| |||| | ||| | |||| || |||| || || |||||| || || Sbjct 339311 ACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCG---ACAAT 339255 Query 37124 ATTAACAATAACTTCT-TCAGTTGGGGGATATTTTAA-ATAT-----TTAAACAA-TAAA 37175 | | | ||| |||| || |||| | |||| | || || || | || Sbjct 339254 AATTTCTTTAA-TTCTATCTTTTGGCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAA 339196 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 | |||||||||||||||| |||||| || | | |||||||||||||| || ||||| Sbjct 339195 CC-GCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAA 339137 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 |||||||||||||| | |||||| | |||| | |||| |||| ||| || || || Sbjct 339136 CCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAG 339077 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||||||||| ||||| || | || | | | | || |||| | | || Sbjct 339076 ATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAA---TGAATCAGATTCG--- 339023 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 ||||||||| | ||| ||||| ||| |||| || ||| | || || Sbjct 339022 ATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGCATTA 338963 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 || | ||||||| | ||| ||| ||| |||||||||| |||| ||| | Sbjct 338962 AACAACTCTGATTTTTCTGCTTCGTCTTTTACATACGTATCAATTAATAAAGAATAAGTC 338903 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||| ||||||||| || || ||||| ||||||||||| || | ||||| | || Sbjct 338902 TCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGTAT 338843 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 ||||| ||||||| ||| ||| ||| | ||||| || || || || || ||| ||| Sbjct 338842 TGAACCTCGTTAACAAAATTCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCAGCA 338783 Query 37596 AAGAAAGCAAGAACATATTTTATAAAAT---GTCTTTCATCATTTGATAATTTTTTCCAA 37652 || || || | || || ||| || |||| || || ||||| | || |||||| Sbjct 338782 AAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTCCAA 338723 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 || | | ||| | |||||| | ||| || | ||||| ||||| || | || | Sbjct 338722 TCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGC--TTCCATTT 338665 Query 37713 TTATACATCGT--CCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || || | | | ||||||||||| ||||| || ||||| || || || Sbjct 338664 TTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAA 338616 >seq2491 Length=10632 Score = 181 bits (200), Expect = 1e-40 Identities = 538/825 (65%), Gaps = 16/825 (2%) Strand=Plus/Minus Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 |||||||||| || || || ||| | || || ||||| || || |||| || || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCA 37002 | |||||||||||||| ||||| | | || |||||| | || | | ||||| || Sbjct 4805 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 4746 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 | || || |||||||| || || || | |||| |||| || || || || | Sbjct 4745 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 4686 Query 37063 GTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTT---TAA 37119 | || || | |||||| || |||| ||||| ||| ||| || || ||| Sbjct 4685 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 4626 Query 37120 CTATATTAACAA-TAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACAT 37178 | || ||| | | || |||||| || ||| | |||| | | | || Sbjct 4625 TTCCATGAACGACTTCCTGGCTCAGTTT----ATTTTTGAGCATTTTATAAAGCAGGCAG 4570 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||| |||||||| | || |||||||| ||||| |||||| |||||||| ||| Sbjct 4569 GCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCT 4510 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA-AAGAAAAT 37297 ||||| | ||||||||||| | ||| || || | || ||| ||| | |||||||| Sbjct 4509 GGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAAT 4451 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 ||||| ||||| || || || || | |||| | ||| || | | | || Sbjct 4450 GCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA------AT 4397 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| || ||| ||||| ||| || ||||| || || || | || | || Sbjct 4396 CCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAA 4337 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 || || |||||||||| |||| | ||||| ||||| || || | ||| |||| Sbjct 4336 CAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTC 4277 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 |||||| || ||||| || ||||| || ||||||||||| | ||||| | | || Sbjct 4276 AGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTG 4217 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || ||| | | || || || | ||||||||| || || || ||||| || ||||| Sbjct 4216 TACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAA 4157 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATT 37657 |||||||| | || || ||||| | || | | ||| || | ||| | || Sbjct 4156 AAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTT 4097 Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGC 37702 || | || | |||| ||| ||| ||||||| |||||||| Sbjct 4096 CTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGC 4052 >seq2141 Length=1138 Score = 114 bits (126), Expect = 2e-20 Identities = 223/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 37444 TTATA-TAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATC 37502 ||||| | | ||| ||||| | ||||| | || || |||||||||||||| || || Sbjct 47 TTATAGTTATTATAAATTACATACCTATAAGTCTCTGAATGAATATTTTCAATGGCAATT 106 Query 37503 TGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCT 37562 || |||||||| ||||| |||||||||| | ||| || || | || || | || Sbjct 107 TGGAAACCATAGAAACATCTAGCTTCAGGGATTTGGACCTCTGACATGAATCTGGTGGCC 166 Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||| ||||| || || |||||||| || ||||||||||| | || | | | ||||| Sbjct 167 AAGTTCTCATTGACGATACCATCACTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAG 226 Query 37623 TGTCTTTCATCAT--TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACT 37679 || | ||||| | |||| | || | ||| || || || || ||| | || | Sbjct 227 TGACGTTCATTGTCATTGAGCTTGTTCTCCCATTCGTTGATGTCACTTGCAAGGTCTATC 286 Query 37680 TCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGT 37739 || || | |||||||| ||||| || || || | |||| ||||| || Sbjct 287 TCCTCTGCAGTCCAAAAGCTTGCTTCAGCCTTCTTGTAGAGATTCCATATATCGGAGTGC 346 Query 37740 TGTATTGGAAATATTACAAATCTATC 37765 | ||||| || | |||||||||||| Sbjct 347 TTGATTGGGAACAATACAAATCTATC 372 >seq77 Length=77744 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/250 (69%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 78278 ATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTAC 78337 |||| |||| | |||| ||| ||||||| | ||| || || | ||||| |||| || Sbjct 26444 ATTTAGTGAAGACCTGGCGAATCAAGGAAAGACTGTGATAGTGGCAGCATTGGATGGAAC 26385 Query 78338 ATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAAAGGTAAT 78397 || |||||| || ||||||||| | || | | || ||||| | || | ||| Sbjct 26384 ATTTCAAAGGAAGCCATTTGGTAGTGTTTTGGAGTTGGTTCCAAAGGCAGAGAGTATAAC 26325 Query 78398 AAAATTAAATGCTATATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTA-- 78455 ||| || | ||| | |||| ||||||| ||||||||||||| | |||||| || Sbjct 26324 AAAGTTGACTGCCGTTTGTATGATATGTTACCGTGATGCTGCATTTTCTAAAAGAATAGT 26265 Query 78456 -TGTGACGATACTAAAATTGAACTAATTGGTGGAGAGGATAAATATAGTTCTGTTTGTAG 78514 ||| || || |||||||||| ||||| || ||||||| ||||| ||| | Sbjct 26264 TCCTGATGAGGCT---GTTGAACTAATAGGTGGTTCAGACAAATATATATCTGTATGTCG 26208 Query 78515 AAAATGTTAT 78524 |||||||| Sbjct 26207 TGAATGTTAT 26198 >seq915 Length=13476 Score = 82.4 bits (90), Expect = 9e-11 Identities = 193/288 (67%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||| ||||| || | ||| || || | ||| || | || ||||| || || Sbjct 289 AAACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 230 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| ||||| || || | || || | |||||| || | ||| ||| | ||| || Sbjct 229 AATCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGGA-GCAGAAGCTACCACTGAA 171 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 || ||||| || || |||||||| || || | ||| | | || ||| | | | Sbjct 170 AAAGATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAA---TGACTTGGAGTT 114 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | ||||||| | | | ||| || ||||| || |||||| ||| || || || || Sbjct 113 GGTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGC 54 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 || || | | || |||| ||| || | |||||||||||||| Sbjct 53 ATTAAATAAATTCTTCTTTTTCTCAGGATTCTTAATATAAGTATCAAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592217720207280